Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16563 447 / 8e-154 Eukaryotic aspartyl protease family protein (.1) AT5G45120 206 / 1e-60 Eukaryotic aspartyl protease family protein (.1) AT3G52500 142 / 3e-37 Eukaryotic aspartyl protease family protein (.1) AT2G03200 117 / 3e-28 Eukaryotic aspartyl protease family protein (.1) AT3G25700 104 / 4e-24 Eukaryotic aspartyl protease family protein (.1.2) AT3G18490 100 / 2e-22 Eukaryotic aspartyl protease family protein (.1) AT1G01300 100 / 2e-22 Eukaryotic aspartyl protease family protein (.1) AT3G54400 91 / 2e-19 Eukaryotic aspartyl protease family protein (.1) AT3G61820 90 / 4e-19 Eukaryotic aspartyl protease family protein (.1) AT1G25510 88 / 2e-18 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000725 [exp] 739 / 0 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 558 / 0 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 536 / 0 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 156 / 9e-42 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 129 / 3e-32 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 127 / 2e-31 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 114 / 7e-27 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 100 / 8e-23 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 97 / 2e-21 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076300 [exp] 523 / 0 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 521 / 0 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 196 / 7e-57 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 194 / 4e-56 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 162 / 3e-44 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 155 / 7e-42 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 139 / 5e-36 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 105 / 2e-24 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 99 / 3e-22 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 97 / 2e-21 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008513 pacid=23177388 polypeptide=Lus10008513 locus=Lus10008513.g ID=Lus10008513.BGIv1.0 annot-version=v1.0 ATGAAAAAACCAAACTCTGCAACTCTCATACTCTGTTTCCTCCTCTGTTTCTTCCTCCAAATCTCCATCTCCATTTCCCACCTCATCCTCCCTCTAACCC ACTCCCTCTCCACTACCCAATTCACCTCCCCTCACCACCTCCTCAAATCCACCTCCTCCACCTCTGCCGCCCGCTTTCGCCGCCACCATCACCGCCAAGT CTCCCTTCCCCTGTCTCCGGGCACTGACTACACTCTCTCCTTAACCCTCAACTCCAAAACCAACATCTCTCTGTACTTGGACACCGGAAGTGACCTTGTA TGGCTCCCTTTCCGCCCTTTTGAATGCATCCTCTGCGACGGCGAGACGCAGCTGAACGAAACGTCATTGATCGCCGGAAAACTTTCATCCGCCGCGGCCG CTGTTCCTTGTAAATCGGCGGCTTGCTCCGCCGTGCATTCCAAACTCCCGCCCTCCGACCTCTGCGCGATCGCTGGATGTGGGTTGGATTCGATTGAGAC TTCGGATTGTGGGAAAGAATTCTCTTGCCCGGAGTTTTACTATGCTTACGGCGACGGGAGTCTGGTGGCGAAGCTTTATTCTGACGCCGTTACCCTGCCG TTAGCTTCTCCGTCTTTGAGGATGGAGAATTTCACGTTTGGTTGCGCCCATACCGCTCTGGCTGAACCAGTCGGGGTGGCCGGGTTCGGCCGAGGGATTT TGTCATTGCCCGCTCAGCTTGCTGCTGAATTTCCTCTGTTGGCTAGCCGGTTTTCGTATTGTTTTGTCTCTCACGCGTTTGACTCGGACAAGGTTCGTCG CCCGAGCCCGTTGATTCTTGGGCGGTTCGATGAGGAGGAAAAACGGGCGGGTGGCAGTGGTGGTGGTGATCTGACCCGATATGTGTACACTTCCTTGTTG AATAACCCGAAGCATCCATACTTTTACTCAATCGGGTTGGTCGGGATTTCGGTCGGGAATAGGTACATTCAAGCGCCGAAGGTGTTAAAAAGGATCGATC ACGAAGGGACAGGTGGGTTAGTGGTGGATTCGGGTACGACCTATACAATGCTACCAGGAAGGTATTATAACGCGGTGGTGACCGAGTTCGATAACCGAGT CGGTCGGATTCACAAACGGGCACATGATGTCGAGGGGAGAGCTGGTTTGAGTCCCTGCTACTACTACGACGTCGTAGCAAGCGTGCCGAGCATGGTGCTG CATTTTTCCGGGAACGGATCGAGTGTGGCGATACCTAAGATGAATTATTTTCATGAGTTTTTGGACGGTGGAGATGGTTCCAAGGGGAAGGGGAAGGGGA AGAAAAGGAAAGTTGGGTGCTTGACGTTGATGAACGGTGGAGATGAGGCGGACTTGAAAGGAGGGCCTGGGGGTACTTTGGGGAATTTCCAACAACAAGG ATTTGAAGTGGTGTATGATTTGGAGAAAGGAAGGGTTGGGTTTGGTAGAAGGGAGTGTTCAACCTTGTGGGAAAGCTTGAACCAAGGCTAA
AA sequence Show only first row Show all	>Lus10008513 pacid=23177388 polypeptide=Lus10008513 locus=Lus10008513.g ID=Lus10008513.BGIv1.0 annot-version=v1.0 MKKPNSATLILCFLLCFFLQISISISHLILPLTHSLSTTQFTSPHHLLKSTSSTSAARFRRHHHRQVSLPLSPGTDYTLSLTLNSKTNISLYLDTGSDLV WLPFRPFECILCDGETQLNETSLIAGKLSSAAAAVPCKSAACSAVHSKLPPSDLCAIAGCGLDSIETSDCGKEFSCPEFYYAYGDGSLVAKLYSDAVTLP LASPSLRMENFTFGCAHTALAEPVGVAGFGRGILSLPAQLAAEFPLLASRFSYCFVSHAFDSDKVRRPSPLILGRFDEEEKRAGGSGGGDLTRYVYTSLL NNPKHPYFYSIGLVGISVGNRYIQAPKVLKRIDHEGTGGLVVDSGTTYTMLPGRYYNAVVTEFDNRVGRIHKRAHDVEGRAGLSPCYYYDVVASVPSMVL HFSGNGSSVAIPKMNYFHEFLDGGDGSKGKGKGKKRKVGCLTLMNGGDEADLKGGPGGTLGNFQQQGFEVVYDLEKGRVGFGRRECSTLWESLNQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	0	1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	1.0	0.8528
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	2.8	0.8475
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	3.5	0.8312
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	4.9	0.7882
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	6.0	0.7160
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	8.9	0.7605
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	11.0	0.7291
AT5G13030			unknown protein		Lus10031224 [exp]	12.0	0.7562
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	16.0	0.7169
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	23.0	0.7650

Compare expression of checked genes

Lus10008513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.