Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35720 641 / 0 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 80 / 3e-16 DNAJ heat shock family protein (.1) AT3G47940 79 / 7e-16 DNAJ heat shock family protein (.1) AT3G08910 74 / 3e-14 DNAJ heat shock family protein (.1) AT4G28480 71 / 2e-13 DNAJ heat shock family protein (.1.2) AT4G39960 72 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 71 / 5e-13 DNAJ heat shock family protein (.1) AT1G10350 70 / 8e-13 DNAJ heat shock family protein (.1) AT5G01390 68 / 1e-12 DNAJ heat shock family protein (.1.2.3.4) AT3G62600 69 / 2e-12 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004716 [exp] 1013 / 0 AT2G35720 676 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030803 [exp] 75 / 2e-14 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013981 [exp] 74 / 5e-14 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10013280 [exp] 74 / 6e-14 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10036668 [exp] 74 / 6e-14 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10015402 [exp] 72 / 2e-13 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10017687 [exp] 71 / 3e-13 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 71 / 4e-13 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 71 / 4e-13 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158200 [exp] 704 / 0 AT2G35720 711 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G076600 [exp] 697 / 0 AT2G35720 719 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G066100 [exp] 74 / 3e-14 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 72 / 1e-13 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 72 / 2e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 71 / 4e-13 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 71 / 5e-13 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 71 / 5e-13 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 70 / 5e-13 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 69 / 2e-12 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11875 [flax] [poplar] DUF3395 Domain of unknown function (DUF3395)
Representative CDS sequence Show only first row Show all	>Lus10008515 pacid=23177409 polypeptide=Lus10008515 locus=Lus10008515.g ID=Lus10008515.BGIv1.0 annot-version=v1.0 ATGAACTCGAGGGAAGAAGGAGCTCCCAACAGGGAGCTGTACGCGGTGCTTCAAGTCTCCCCTGAATCCACCGTTGACGATATCAAGAAGGCTTATCGCC ACTGGGCTCAAGTTTATCATCCTGACAAGTACCAGGACGCTCATATGAAGGAAACGGCAACTGAGAACTTTCAAAGGATATGTCAAGCGTACGAGGTGCT ATCAGACGAGACTAAAAGGCAGATATACGATATATACGGTATGGAAGGGGTGACTGCCGGTATGGAGCTCACAACAAGGACGAGTAAATTGGAAGAGTTG AAGGAAGAGCTCGACAGATTGCAGAAGAAGAAGGAAGAAGAGAAGATGGCAGCTCAGTTCTCGCCGTCTGGTGCAGTATTGACTAATCTTTCTGTGCCTC AGTTTCTTGACGGAGACGGCATCTTGAGTGGAATGGGTATGACTACTCAAGTACACACCCAGCTGTCGAAGGATACGAATCTTGCAATGGGTGGAAATTT AGAAGTTAATAACCATGGTGCTGGCTCAGCTGCTTCGACTGTAATACAGCATCAAATTTCTCCTGCTCAGTCGATGCAATTTCAAGCTTCGGTCGGGTTA CAGTCACTAATTGGTGTGCAAACAACCCGCATCATTTCTTCACATTCAACAGCTACATTCAACATCCAAAAGTCTTTCCCAGGCGGTTCGATCAATCTTT CTAATACCTGGACTCGCCAACTGTCTCTGACAGCTACCGGGAAGATACAACTTGTTCTTGGTGATAAGTCATCCATAGGCGTCGGGTGGCAGAAGAAGGA TGAGAAAATGTCTGCTAGTGGAGAATTGAAAGTCGGTATAGGTTTTGTCGACGGATCAGCTCAATATGTTCATCGATTTTCCAAGAATTCGCATGGCCGT ATTGTAGGAAGATGCGGAAGCACTGCTCTTGAGATTGAAGTTGGTGTTGGGAGGAAGATATCCGATTTGACCTCTGCCCGGATGATGTATACCGTTGGAA TTCAGGGCATATTTTGGAAATTTGAAATGCGCCGTGGATCTCAAAAATTACTTGTGCCGGTATTGCTTTCCGCCAATTTCAATCCATTGTTTGCGGTCGG AGCATTTGTAGTTCCAATGTCTCTCTACTTCCTGCTCGAGAGATTTGTTGCCAAGCCTCTTCACCAATGGAGGGAGAAGGGGAAAGCTTTGGAGAATAAG CAAAAGACTTCAGTAAAGGTCAAAGAAGCGCGAATAGCAGCAGAGAAGTCTCAGAAGTTGTTACGAGTCGTGGCGGAGAGGAAAAAAACTAAGCAAAAGG AATCGAATGGACTCGTTATCGACCGGGCAGTGTATGGACGTCGGGAAGTAGTTAGTAGACAAGACGATGGATCAATCCCCAATGGTGAAACGGCTTTGGA TGTCATTGATGTCACGGTTCCTCTCAGTTTCTTGGTTAACGATTCCGGCAAACTTCAGCTACACAAAGGTGTGAAGAAGTCCGGGATTATGGGGTTCTGT GATCCCTCACCTGGAGAACAGAACCAGTTGCTCGTCGAATACACGTATCGCAGCCAGAAGTTCAAGGCGATCGTGGATGACTACGACGAGCTGATAATAC CTCAGCACGCTCATCTAGTCTGA
AA sequence Show only first row Show all	>Lus10008515 pacid=23177409 polypeptide=Lus10008515 locus=Lus10008515.g ID=Lus10008515.BGIv1.0 annot-version=v1.0 MNSREEGAPNRELYAVLQVSPESTVDDIKKAYRHWAQVYHPDKYQDAHMKETATENFQRICQAYEVLSDETKRQIYDIYGMEGVTAGMELTTRTSKLEEL KEELDRLQKKKEEEKMAAQFSPSGAVLTNLSVPQFLDGDGILSGMGMTTQVHTQLSKDTNLAMGGNLEVNNHGAGSAASTVIQHQISPAQSMQFQASVGL QSLIGVQTTRIISSHSTATFNIQKSFPGGSINLSNTWTRQLSLTATGKIQLVLGDKSSIGVGWQKKDEKMSASGELKVGIGFVDGSAQYVHRFSKNSHGR IVGRCGSTALEIEVGVGRKISDLTSARMMYTVGIQGIFWKFEMRRGSQKLLVPVLLSANFNPLFAVGAFVVPMSLYFLLERFVAKPLHQWREKGKALENK QKTSVKVKEARIAAEKSQKLLRVVAERKKTKQKESNGLVIDRAVYGRREVVSRQDDGSIPNGETALDVIDVTVPLSFLVNDSGKLQLHKGVKKSGIMGFC DPSPGEQNQLLVEYTYRSQKFKAIVDDYDELIIPQHAHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10008515 [exp]	0	1
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	2.2	0.9074
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	6.0	0.8923
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	6.5	0.8851
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	13.3	0.8924
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	20.6	0.8830
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	23.7	0.8771
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	33.8	0.8853
AT5G66810			unknown protein		Lus10016766 [exp]	38.5	0.8749
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10013578 [exp]	42.2	0.8783
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	43.1	0.8801

Compare expression of checked genes

Lus10008515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.