Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51560 47 / 5e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004719 [exp] 644 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 430 / 3e-141 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002248 [exp] 406 / 9e-137 AT5G40060 42 / 0.001 Disease resistance protein (NBS-LRR class) family (.1) Lus10002249 [exp] 402 / 3e-128 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 396 / 9e-123 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 360 / 2e-111 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 317 / 4e-95 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 296 / 2e-89 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008525 [exp] 210 / 5e-63 AT3G44670 52 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135700 [exp] 45 / 0.0002 AT3G14470 380 / 2e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145580 [exp] 44 / 0.0002 AT3G44480 81 / 2e-16 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.018G135800 [exp] 43 / 0.0009 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008516 pacid=23177371 polypeptide=Lus10008516 locus=Lus10008516.g ID=Lus10008516.BGIv1.0 annot-version=v1.0 ATGTTTCGGATAGAAATCAAGGAAGTTGATATTGGGGAGTTAAAGAACCTAAAGACGTTGTATCTGGGTTTCAGTAAAATACAAAAGATAAGTGGGGGAA CCTTTGGTATGTTGAAGGGACTCATAGTGCTTCGTCTCGACTCCATCAAGTGTACAAATTTGAGAGAAGTAGTTGCCGATATTGGACAACTTTCGTCTCT CAAAATCTTGAAAATAGAAGGAGCTAAGGAGGTCGAGATTAATGAATTTCCATTAGGCTTGAAGAATGAATTTCCATTAGGTTTGAAGGAGTTATCCACT TCATCTCGGATTCCGAATCTTTCACAGTTGTTGGATTTGGAGGTACTGAAGGTTTATGATTGCAAGGATGGATTTGACATGCCTCCTGCTAGTCCGAGTG AAGATGAAAGTAGTGTGTGGTGGAAGGTATCCAAGTTGAAGTCTTTGAAACTCAGGAATACAAGAATCAATATAAAAGTTGTGGATGATGCTTCTTCCGG TGGTCACCTCCCTCGTTATTTACTACCAACGTCCCTAACCTCTCTCAAAATTAATTCGTGTTCAGAACCAACGTGGCTTCCAGGAATAGAAAACTTGGAG AATTTGACTTCGCTGGAAGTCTACAATGTCTTCCAAACTCTTGGAGGTGATTTGGATGGCCTACATGGGTTGAGATCATTGGAAATTCTTAGGATTTGGA AAGTAAATGGTTTAGTTCGGATCAAAGGGCTTAAGGATCTCTTGTGTTCTTCTACCTGCAAGTTGCGGAAATTAGAGATTGAAGCATGCCATGACCTCAC TGAGATACTTCCATTTGAACTCGACGACCAAACAGTAGTAGTAGTCCCCTCTTTGGTTGAACTGACCATTATGGATTCTCCACGGCTGGAGGTTGGCCCG ATGATAAGATCTCTCCCAAAGCTCCCAATGCTAAAGAAGTTGTTCCTCGCGGTGGGAAATATAACTAAAGAGGAGGATGTGGATGTGATTGGATCCTTAG AAGAGTTGGTTGATTTATGGTTAGAGTTAGATGATACATCCTCCGGTATAGAGAGGATAGCTTTCTTTTCGAAGCTGCAAAAGTTAACTAAACTCACAGT GAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTTTAAAAGATTTGATTTTAGAGGGTTGCACGTTGTTGCGGAAACTGCATCTG GAGAAGCTGAAAGAGGTAGACATTGGAGGATGCCCTGCCCTCACTGAGTTAGTCCCATGCGAACTCGATGACCAAACCGTAGTAGTAGTCCCCTCTTTGG TAACACTGACCATTAGTGATTGTCCACGGCTGGAGGTTGGTCCAATGATACAATCTCTGCCAAGCTTCCCAATGCTAAAATATTTGACGCTCTCGATGGT AAAAATCACTAAGGAGGAGGAGCTGGAGGTGCTTGGATCCCTAGAAGAGTTGGTTATTTTGAGGTTAAAGTTAGAAGATACATGTTCCAGCATAGAGAGG ATACCTTCCTTGTCAAAGCTGCAAAACTTGTATACACTCGAAGTTCATGTACCAAGTTTGAGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTTTACGAA GATTGGAGTTAGAGGGATGCACGTCGTTGGAGACACTGGGGGGGCCTGGGAATCAGCAACTCGGTAAGCTGAAGGTGCTATACATCCGAGGTTGCAGAAG TTTGAGCGTTGATCATCTCGCTGCACTCAAAACCACCCTACCGCCCACTGTAACAATAGAATGGCCCGATCAGCCAGACATATGA
AA sequence Show only first row Show all	>Lus10008516 pacid=23177371 polypeptide=Lus10008516 locus=Lus10008516.g ID=Lus10008516.BGIv1.0 annot-version=v1.0 MFRIEIKEVDIGELKNLKTLYLGFSKIQKISGGTFGMLKGLIVLRLDSIKCTNLREVVADIGQLSSLKILKIEGAKEVEINEFPLGLKNEFPLGLKELST SSRIPNLSQLLDLEVLKVYDCKDGFDMPPASPSEDESSVWWKVSKLKSLKLRNTRINIKVVDDASSGGHLPRYLLPTSLTSLKINSCSEPTWLPGIENLE NLTSLEVYNVFQTLGGDLDGLHGLRSLEILRIWKVNGLVRIKGLKDLLCSSTCKLRKLEIEACHDLTEILPFELDDQTVVVVPSLVELTIMDSPRLEVGP MIRSLPKLPMLKKLFLAVGNITKEEDVDVIGSLEELVDLWLELDDTSSGIERIAFFSKLQKLTKLTVKVPSLREIEGLAELKSLKDLILEGCTLLRKLHL EKLKEVDIGGCPALTELVPCELDDQTVVVVPSLVTLTISDCPRLEVGPMIQSLPSFPMLKYLTLSMVKITKEEELEVLGSLEELVILRLKLEDTCSSIER IPSLSKLQNLYTLEVHVPSLREIEGLAELKSLRRLELEGCTSLETLGGPGNQQLGKLKVLYIRGCRSLSVDHLAALKTTLPPTVTIEWPDQPDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	1.7	0.9073
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	4.6	0.8559
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	9.0	0.8447
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	9.2	0.8637
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	10.4	0.8522
AT5G57910			unknown protein		Lus10035808 [exp]	11.2	0.8181
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	12.6	0.8543
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	14.8	0.8425
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10040961 [exp]	15.7	0.7545
					Lus10042751 [exp]	16.5	0.8400

Compare expression of checked genes

Lus10008516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.