Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56440 54 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44980 54 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00160 52 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G49030 50 / 2e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT3G52680 50 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G48400 49 / 5e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G26922 47 / 8e-06 F-box/RNI-like superfamily protein (.1) AT1G13780 48 / 9e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 48 / 9e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 47 / 1e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008524 [exp] 270 / 6e-87 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004718 [exp] 221 / 4e-70 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10008511 [exp] 188 / 2e-55 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000729 [exp] 187 / 2e-54 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10000726 [exp] 184 / 7e-54 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10000727 [exp] 183 / 1e-53 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000728 [exp] 182 / 4e-53 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 91 / 6e-20 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 90 / 1e-19 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 85 / 4e-18 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 80 / 2e-16 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 80 / 2e-16 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 62 / 2e-10 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 61 / 5e-10 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 56 / 2e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 45 / 8e-05 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.014G163866 [exp] 44 / 0.0001 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.015G002001 [exp] 42 / 0.0003 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008517 pacid=23177391 polypeptide=Lus10008517 locus=Lus10008517.g ID=Lus10008517.BGIv1.0 annot-version=v1.0 ATGGCTGGCCAGCGGATAAAATTTGCAAAACGGAGGAAAACAACGGCGGAGACGACCGAAGAACAAACTACTGCCCCCGACAGGATCAGCGACCTTCCCG ATGAAATCCTCATTAAGATACTAACCGCCGCCGATCTGGACACGAAAACCGTCATCCAAGCATCCGCCTTCTCCCGCAGCTGGCGAAACCTCTGGAAATC AGTCCTGGCCGCCAAGCTCTCATTCGACTTCCCCGACGGCACAAAACTCACCCGAACAGAACAGCGTCGTTTCGCGGCCTTCGTCGACAAAGCCCTGTCG CTTCTCGACAAGGAGTATAACGACGCCGTCCTCTCAGTGACCGTAAACCATCCCTTGATCCCGAGGTTTTCGACACTATTGGACCGGATCTTCGCCCACG GGGCACGAACCCGGAATCTCAAGCTCTCGTACAACATACCGAAATTTTATTTCTCGTTGCTCGAGGCGCACACCAGTAAGGGGCCGCAGAATTTGAATTT CTCCACGCTCACGATGCTCCGTCTGTACCGGTGCGTGCTACGCTGGAAGTTCAACATGGTTCCGAATTTGACCGATTTGGAGGTGATCGAATGCGAGTTG CTGTCTCGTCCGTTCACAATTTCGGGCGATAAGCTGGTCAGGATCGTGTTGGTGCATTCTAACGAGCGACTGTCGCACAATCCCAGTGTTGAAATCCGTG CGCCAAATTTAAAGTCTTTTACGTGCAAGGGGCTGAACCCGGCCCGGTATACGAGTTCGGTACTCCGGTCATTGGAATGTTTGGATATCGATGTTCGTCT CAGGACCACTCAGTGGGCTGAGACGAAGAAGAGGCAAACGAGTTGGGATTTTTTTCGTATGTTTCGCTGCTTCTGCAGAGCCGAGCGTGTGATGCTACAC CCTAACGCGATTTTGGCGCTTACAATGTTCCCAGATGTACTAGAGAAGCAAATGTCTCCATTCAAGAGAATGCAACGCTTGGAACTCCATGACAGTGAGT GTGTTCTACCGAGCCGTGAAGTGTTCAACTCTTTGATAAGTTACTTCTTCGGACAATCTCCTCAAGAAACTACTCACTTCGATCGTATTTTCGCCTCAGA AGATTCTAACGAATACAACTCTCTCCCGATAGTTGTCCGCAAGGGCGACTTAATGGCTTGA
AA sequence Show only first row Show all	>Lus10008517 pacid=23177391 polypeptide=Lus10008517 locus=Lus10008517.g ID=Lus10008517.BGIv1.0 annot-version=v1.0 MAGQRIKFAKRRKTTAETTEEQTTAPDRISDLPDEILIKILTAADLDTKTVIQASAFSRSWRNLWKSVLAAKLSFDFPDGTKLTRTEQRRFAAFVDKALS LLDKEYNDAVLSVTVNHPLIPRFSTLLDRIFAHGARTRNLKLSYNIPKFYFSLLEAHTSKGPQNLNFSTLTMLRLYRCVLRWKFNMVPNLTDLEVIECEL LSRPFTISGDKLVRIVLVHSNERLSHNPSVEIRAPNLKSFTCKGLNPARYTSSVLRSLECLDIDVRLRTTQWAETKKRQTSWDFFRMFRCFCRAERVMLH PNAILALTMFPDVLEKQMSPFKRMQRLELHDSECVLPSREVFNSLISYFFGQSPQETTHFDRIFASEDSNEYNSLPIVVRKGDLMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00160			F-box/RNI-like/FBD-like domain...		Lus10008517 [exp]	0	1

Compare expression of checked genes

Lus10008517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.