Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16600 608 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35710 606 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT5G18480 100 / 3e-22 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G08990 77 / 1e-14 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT3G18660 67 / 1e-11 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G54940 66 / 3e-11 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G77130 64 / 1e-10 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT4G33330 64 / 2e-10 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004717 [exp] 852 / 0 AT4G16600 673 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10027949 [exp] 93 / 5e-20 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 77 / 1e-15 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10028623 [exp] 73 / 3e-13 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 71 / 8e-13 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 71 / 8e-13 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 71 / 1e-12 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10021731 [exp] 70 / 2e-12 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 69 / 5e-12 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076800 [exp] 632 / 0 AT4G16600 633 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.001G158000 [exp] 630 / 0 AT4G16600 678 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.013G049100 [exp] 87 / 6e-18 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.005G187900 [exp] 74 / 9e-14 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G033500 [exp] 72 / 5e-13 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.007G107200 [exp] 70 / 1e-12 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G029900 [exp] 67 / 8e-12 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.005G061600 [exp] 67 / 1e-11 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.013G022900 [exp] 67 / 2e-11 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10008518 pacid=23177396 polypeptide=Lus10008518 locus=Lus10008518.g ID=Lus10008518.BGIv1.0 annot-version=v1.0 ATGGCGAGCTGTAATGGGTTGCTGCTGTTGTTCTTCTTAGCTCTTGCCGTGTTAGGAGGATCCGAAACGGCGGCGTTCGGGCCTGAGAAGGGAGAGAAGA AGATGACGATGACTCATCAGTTGTGGCCCAAGCATAGGAATGCTTACGCGACGATGATGTACATGGGTACTCCAAGGGACTACGAGTTCTACGTTGCTAC TCGCGTCCTGCTCAGATCTTTGCGCAGTCTCTCTGTAAATGCTGATCTCGTCGTCATTGCTTCGCTCGATGTTCCTCCTCGATGGGTCCAAGCCATGGAA AAGGAAGATGGGGCGAGAGTGGTGAGTGTGGAAAATGTGAACAATCCGTACAAGGACCAGAGCAACTTCGACCATAGATTCAAGCTTACACTGAACAAGC TCTACGCTTGGAGCTTGGTGGACTACGAGCGGGTGGTCATGTTGGATGCTGATAATCTCTTCCTTCGCAACACCGACGAGCTTTTCCAGTGTGGGCAGTT CTGTGCTGCGTTCATCAACCCCTGCATTTTCCATACTGGTCTCTTTGTATTGCAGCCGTCTAACGAAGTGTTCAAAGACATGCTTCATCAACTGGAAGTG GGGAAAGACAACCCGGATGGTGCAGACCAAGGTTTCATCGGTGGATACTTCCCTGACTTGCTTGACAAGCCACTGTTCCACCCTCCTGCCAATGGCTCTG TCGTTGCGGGTGGGAATCCAGACCTTAGACTCCGATGGAACGTCCCTTGTGGCCCTAATAGTGTCATAACTTTCCCCGGTGCGTCGTGGTTGAAGCCATG GTACTGGTGGTCTTGGCCCGTTCTTCCTCTGGGCATCGACTGGCACGAGAAACGTCGTCAGCATCTTGGATATGGGGCAGAGATGCCAATGGTGGTGATC CAATCAATACTCTACCTAGGAATCATAGCCGTGACTCGTCTAGCCCGACCAAACCTAACCAAGCTATGCTACCGAGGAAGCAGCGACAAGAACATTATCT CCTCACTCCAATCCGGCCTAAAGGTGCTATCTTTATGGGCGATACTTGCAGCCTACGTAACCCCATTCTTCCTAATCCCTTGCACCCTCCACCCTCTACT TGGCTGGTCACTCTACCTCCTCGGCACATTCGCACTCTGCTCGGTCGCCATCAACGCGTTCATGCTCCCAACGATCCACGTCCTGACACCATGGATCGGG ATTTTCGGAGTTCTGCTAGTGATGGCGTGTCCTTGGTACACCAATGGAGTTGTGAGAGCACTGTCTGTATTCGTCTACGCCTTCTGCGCTGCTCCAGTGC TCTGGATTTCTTCCACCAAAGTTGTTGCTAGCCTTCAGGTATCGCTCGAACGGGAAGCCTTCTTCCCCAAGCTCGGAGAATACTCTTCCCCTTCTTCTTC GTCTTCTTCTTCCTCGCCACGCTTCGGGTTGAACAAGCTATGCTAA
AA sequence Show only first row Show all	>Lus10008518 pacid=23177396 polypeptide=Lus10008518 locus=Lus10008518.g ID=Lus10008518.BGIv1.0 annot-version=v1.0 MASCNGLLLLFFLALAVLGGSETAAFGPEKGEKKMTMTHQLWPKHRNAYATMMYMGTPRDYEFYVATRVLLRSLRSLSVNADLVVIASLDVPPRWVQAME KEDGARVVSVENVNNPYKDQSNFDHRFKLTLNKLYAWSLVDYERVVMLDADNLFLRNTDELFQCGQFCAAFINPCIFHTGLFVLQPSNEVFKDMLHQLEV GKDNPDGADQGFIGGYFPDLLDKPLFHPPANGSVVAGGNPDLRLRWNVPCGPNSVITFPGASWLKPWYWWSWPVLPLGIDWHEKRRQHLGYGAEMPMVVI QSILYLGIIAVTRLARPNLTKLCYRGSSDKNIISSLQSGLKVLSLWAILAAYVTPFFLIPCTLHPLLGWSLYLLGTFALCSVAINAFMLPTIHVLTPWIG IFGVLLVMACPWYTNGVVRALSVFVYAFCAAPVLWISSTKVVASLQVSLEREAFFPKLGEYSSPSSSSSSSSPRFGLNKLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	0	1
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	2.0	0.8022
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	2.6	0.8311
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	5.2	0.8053
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	13.0	0.7817
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	14.0	0.8066
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	14.8	0.7639
AT5G17680			disease resistance protein (TI...		Lus10030345 [exp]	15.5	0.7989
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	15.9	0.7481
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	19.3	0.7241
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	19.5	0.7639

Compare expression of checked genes

Lus10008518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.