Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47490 1014 / 0 RGPR-related (.1) AT5G47480 992 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004721 [exp] 2280 / 0 AT5G47490 1141 / 0.0 RGPR-related (.1) Lus10028946 [exp] 1702 / 0 AT5G47490 1196 / 0.0 RGPR-related (.1) Lus10007471 [exp] 1116 / 0 AT5G47490 778 / 0.0 RGPR-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157800 [exp] 1484 / 0 AT5G47490 1114 / 0.0 RGPR-related (.1) Potri.003G077100 [exp] 1438 / 0 AT5G47490 1033 / 0.0 RGPR-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008520 pacid=23177395 polypeptide=Lus10008520 locus=Lus10008520.g ID=Lus10008520.BGIv1.0 annot-version=v1.0 ATGGATTCTAATCCTCCATTCCAAGAGACGGAGGATCAAATCGACGATGATTTCTTCGACAATTTAGTTGAAGATGATATCGGTGCCGCGAGCAGCTCGC AGAAGAAGTTGGCTACGGAGGGGAGTGATTCCGATGAGGCCAAGGCGTTTGGTAATCTGAGCATTGAGGATTCAAACGGTGTTGGCGATGGGTTTGAGGA GGTGAGGAATGGAGAGGAATTGGAGGATGTTAATGTGGAAGAGAGTGATGCTGCATTGAACAATGCGATGGATTTGAATAATGACGGGACGGCGTCGGAG GCTGTGCCTGATTTGAATCCAGTAACTGATATCGGATCAACAAAGTCGGGGGCTAAGGAGGTGGGATGGAGCTCGTTGTTTGCTGATTCATCACCGGACG GAGACCGGCATGGTTTTGGTTCGTACTCTGATTTTTTCAGCGAGTTGGGAGGCGATACTAATGGTTCTCCTGTGAAAGTCGACGCAAGAAGTGGGAATGT GGAAGAAGTTACAAGTGGGAAATTGCAGAATTCTGCTAGTCATGAGCAGTATCAAGAAGGTACACAAGTTCATGGCGGCGGATATTCGCAAGAGAATGCT GGTGTGCAGGATGTGAACAGCACTCAGTACTGGGAAAGTATGTATCCTGGGTGGAAATATGATATGGATACTGGGCAGTGGTACCAAGTAGATGGATATA GTACGGCAGGAGGTGTGCAAGAGAGTTATGGTGCTAATTTAGGAAGCGAATGGGCCGATGCTTCTGTGGGGAAAGGAGCGGTTAACTTCTTGCAGCACAG CTCACAGTCTGTGGCTGGAACTATGACTGGGACGAGCACAACTGAGAACGTGTCTACCTGGAATCAGGTTTCTCAAGAAAGTAACAATGGTTATCCAGCA CATATGATCTTTGACCCGCAATATCCGGGTTGGTATTACGACACGATTGCACAAGAATGGCGTTCACTGGAGAGCTACGCTTCATCAGCTCAATCAGTGA TTCCCCAAACTCAAGAGAGACAGAGTCAGAATGGCTATGGTTTCAACACTAATTATTCACAGACTGTTAGCAATGCATACATTAGTCAGGGACAAGATAT TAGCGGTAGTGATTCAAATAGAGGCTATAACCAGAGAGATATGAATATGTGGTCTGCTCAGAGTGCTTCCAACAACAATTTCAGTCAAGATTTTGGTGAA CAACAGAAGTTTCAGAGCTCCTATGGTTCAAATGCTTTCATGGGCAGTCATCTTGATAATCAACAGGCCTTTAGTAACTTGGGAACAATTCCTTCGTATG AAAAAATGCAGCAAGGCCAATCTGAAGCCAATGGGTTTTTGGGTTCGCATAATAATTTTGGCCAGGACGGCAACTTTAATCAGCAGCTTAATCAGGGAAA TTCGAATCAGATAGGGCAGATGAATTTTTCAAATGATTTTTATAGCAGTCAGAAACCAGTAAGTTTTACTGAGCAGTCTTATCAGAGCAATCAGCAATTA TCTCATGCTCCGGGCAGTGGAAGATCTTCTGCTGGCCGTCCTCCACATGCACTGGTTTCTTTTGGGTTTGGTGGAAAGCTTATTGTAGTGAAGGATAGTG CCTTTGGGAACTCTTCGTTCGGCAACCAGGCTGCTGATGGAGGCTCAATATCTGTTATGAATTTGATGGAGGTTGTTTCTGGAAGTAGTACAGACAATGT TTCAGCTGTTAGAGGCACATCCTGCAATTATTTCCATCCTCTCTGCCAACAGTTATTTCCTGGACCACTGGTCGGTGGGAATGCTGGAACTAAGGATTTA CATAAGTGGATTGACGAGAGGATAGCCAACTATGAATCACCCGATATGGATTACAGAAAGCGCGAGGCATTGAAGCTTCTCCTTTCTTTGCTTAAAATAG CTTGCAAGCATTATGGAAAACTTCGATCTCCTTTTGGGTCTGACACATCGTTGAGGGAAAATGATACTCCAGAATCAGCAGTTGCGAAACTTTTTTCATC TGCCAAGAGCCAACTCAGAGAATATGGGGCTCTTAGCCACTGTTTGCAAAATATGCCATCTGAAGCACAACTTCAGACAACTGCTTCTGCGGTACAAAAT CTTCTGGTTGCTGGTAGAAAAACAGAAGCTTTACAGTATGCAATAGAAGGCCAGTTATGGGGACCTGCCCTTGTGCTTGCATCTCAACTTGGAGATCAGT TCTATGTTGATACTGTGAAGCAAATGGCATTACGTCAATTGTTGCCTGGATCACCTTTACGGACTTTGTGCCTTCTTATTGCGGGACAACCAGCAGAAGT TTTTTCTTCGAATACCAGAAATGATGGTGGTTTTTTCAGTGGTGCAGTTGGCACTCAACAACCTCTGATTCCTGGAGCAAATAGTATGCTCGATGATTGG GAACAGAATCTGGCTCTGATAACTGCAAACAGAACGAAAGACGATGAGCTTGTGATCATTCACCTCGGAGACTGTCTGTGGAAGGATAGGAGTGAGATTA CAGCAGCACATATTTGCTATTTAGTTGCAGAAGCAAACTTTGAGACATATTCAGACACTGCAAGGCTGTGCCTTATCGGTGCAGATCACTGGAAGCATCC TCGTACTTTCGCTAACCCCGAGGCTATTCAGAGAACGGAGCTTTACGAGTATTCAAAGGTGCTAGGTAACTCCCAGTTCATCTTGCAGCCATTTCAGCCA TATAAGCTTGTTTATGCTTATATGCTGGCTGAAGTAGGCAGAGTCTCAGACTCTTTGAAGTACTGCCAAGCAGTGTTGAAATCTTTGAAAACTGGCCGAG CTCCCGAAGTCGAGACATGGAAACAATTAGTATCGTCCCTTGAGGAAAGGATTAGAATACACCAACAGGGTGGATACGGTACAAATTTGGCACCGGCAAA GTTTGTTGGCAAACTGCTCAACTTCTTTGATAGTACGGCCCATCGCGTCGTTGGGCGTTTGCCACCACCGGCACCATCGCCGACTTTGCACGGTCTACAC AGTACCTATCAAGACCAGCAAATGATGGCTCCCAGGGTTGCAGCTAGCCAATCAACAATGGCTATGTCAACGTTGATCCCATCTGCTTCCATGGAGCCCA TAAGTGACTGGACGGCCGATGGTAACAAAATGGGCAGACATTCGAGAAGTGTCTCTGAGCCCGACTTTGGTAGAACTCCAAGACCGGCTCAGCCGGCTGA TTCCTCACCAGCTATCCCAGCCCCAGCCCCAGCCCCAGTGGCCTCCACCACCACAGCCACAGCCAATTCCCAAGAGAAGCCACCGAATCCGTCAGGGGGA TCTCGCTTGGGTCGTTTCTCCTTCGGTTCACAGCTGCTTCAGAAGACAGTTGGCCTCTTACGGTCTACTCGCTCAGATAAACAGGCCAAGTTAGGCGAGA AGAACAAATTCTATTACGACGAAAAGCTGAAGAGATGGGTGGAAGAAGGTGTAGAGCCTCCAGCTGAGGAAGCAGCTCTACCACCTCCGCCAACTACTGC AGTCTTTTCAAACGGAGCAGCGTCTGACTATAACTTAAAATCAGCGTTAAAGAATGAAGGCTCTCCTGCTAACAGAAGCCCTAAATCCCGAAATGCAGCT CCACAGGAACACAGCTCAGGCCTCCCTACTATCCCCGCCAGCTCCAATCAGTTTTCAGCTCGTGCACGGATGGGCGTTCGAGCAAGATATGTGGATACAT TCAACCAAGGTGGTGGTGGGGCAGCAGCGAATTCGTTCCATTCACCGCCCATACCGTCCCCTAAACCTGCTATCACGATGAACACGAAGTTCTTCGTTCC CGCCCCGGCACCTGCTGCTGCTGACAATTCGACAGACACCGCAGCAGACAATGTGCCGTACCCGGGTCACGAAAGCGCTGCATCCACCGAGATTCCTTCG ACGTCTTCAATGAAAAAAAACAGTTCGTTCCATACTCCCATGTCCTCTCCTCCTCCACCTATGATGGTCAGGCAGAGGTTTCCGAGCATGGACAACATTC CCGGAGGTAGGTTCGGCTTAAATGACGGTACACGCTCTCAGTCTCGCCGAACAGCATCATGGAGTGGTAGCTTCGACGACTCGTTAAGCTCGCCAAGGGT CGCGGAAATGGCCAAATCGTCCTTAGGTAATCCTCCTACGACTCGCATGCCAACAAATGGTGGCAGCTTTGGTGATCTCCAGGAAGTCGAACTTTGA
AA sequence Show only first row Show all	>Lus10008520 pacid=23177395 polypeptide=Lus10008520 locus=Lus10008520.g ID=Lus10008520.BGIv1.0 annot-version=v1.0 MDSNPPFQETEDQIDDDFFDNLVEDDIGAASSSQKKLATEGSDSDEAKAFGNLSIEDSNGVGDGFEEVRNGEELEDVNVEESDAALNNAMDLNNDGTASE AVPDLNPVTDIGSTKSGAKEVGWSSLFADSSPDGDRHGFGSYSDFFSELGGDTNGSPVKVDARSGNVEEVTSGKLQNSASHEQYQEGTQVHGGGYSQENA GVQDVNSTQYWESMYPGWKYDMDTGQWYQVDGYSTAGGVQESYGANLGSEWADASVGKGAVNFLQHSSQSVAGTMTGTSTTENVSTWNQVSQESNNGYPA HMIFDPQYPGWYYDTIAQEWRSLESYASSAQSVIPQTQERQSQNGYGFNTNYSQTVSNAYISQGQDISGSDSNRGYNQRDMNMWSAQSASNNNFSQDFGE QQKFQSSYGSNAFMGSHLDNQQAFSNLGTIPSYEKMQQGQSEANGFLGSHNNFGQDGNFNQQLNQGNSNQIGQMNFSNDFYSSQKPVSFTEQSYQSNQQL SHAPGSGRSSAGRPPHALVSFGFGGKLIVVKDSAFGNSSFGNQAADGGSISVMNLMEVVSGSSTDNVSAVRGTSCNYFHPLCQQLFPGPLVGGNAGTKDL HKWIDERIANYESPDMDYRKREALKLLLSLLKIACKHYGKLRSPFGSDTSLRENDTPESAVAKLFSSAKSQLREYGALSHCLQNMPSEAQLQTTASAVQN LLVAGRKTEALQYAIEGQLWGPALVLASQLGDQFYVDTVKQMALRQLLPGSPLRTLCLLIAGQPAEVFSSNTRNDGGFFSGAVGTQQPLIPGANSMLDDW EQNLALITANRTKDDELVIIHLGDCLWKDRSEITAAHICYLVAEANFETYSDTARLCLIGADHWKHPRTFANPEAIQRTELYEYSKVLGNSQFILQPFQP YKLVYAYMLAEVGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVSSLEERIRIHQQGGYGTNLAPAKFVGKLLNFFDSTAHRVVGRLPPPAPSPTLHGLH STYQDQQMMAPRVAASQSTMAMSTLIPSASMEPISDWTADGNKMGRHSRSVSEPDFGRTPRPAQPADSSPAIPAPAPAPVASTTTATANSQEKPPNPSGG SRLGRFSFGSQLLQKTVGLLRSTRSDKQAKLGEKNKFYYDEKLKRWVEEGVEPPAEEAALPPPPTTAVFSNGAASDYNLKSALKNEGSPANRSPKSRNAA PQEHSSGLPTIPASSNQFSARARMGVRARYVDTFNQGGGGAAANSFHSPPIPSPKPAITMNTKFFVPAPAPAAADNSTDTAADNVPYPGHESAASTEIPS TSSMKKNSSFHTPMSSPPPPMMVRQRFPSMDNIPGGRFGLNDGTRSQSRRTASWSGSFDDSLSSPRVAEMAKSSLGNPPTTRMPTNGGSFGDLQEVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	1.0	0.9641
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	2.0	0.9499
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	2.4	0.9430
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	4.5	0.9393
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	6.6	0.9054
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	8.4	0.9253
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	8.7	0.8845
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	9.2	0.9244
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	9.4	0.8829
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	10.6	0.9155

Compare expression of checked genes

Lus10008520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.