Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11470 61 / 3e-10 4'-phosphopantetheinyl transferase superfamily (.1.2.3) AT2G02770 47 / 2e-05 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004722 [exp] 508 / 0 AT3G11470 62 / 8e-11 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10017021 [exp] 62 / 4e-10 AT3G11470 327 / 1e-111 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10021344 [exp] 61 / 5e-10 AT3G11470 349 / 7e-121 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238500 [exp] 353 / 5e-121 AT3G11470 56 / 8e-09 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.006G211300 [exp] 63 / 1e-10 AT3G11470 345 / 5e-119 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.016G078400 [exp] 62 / 2e-10 AT3G11470 328 / 8e-113 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0670 [flax] [poplar] 4PPT PF01648 [flax] [poplar] ACPS 4'-phosphopantetheinyl transferase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008521 pacid=23177375 polypeptide=Lus10008521 locus=Lus10008521.g ID=Lus10008521.BGIv1.0 annot-version=v1.0 ATGGAGAGGTTAGCGAGCCAACGCCCGATTCGAGGCAGATTGCGACCAGGTGCAATCTGTACGTACGGCGCTAATGATGAAGGAGTATTGGCTATTCACC AACATCAATCCATCAATATTAGAAAGGTAACCAGTACTAACGAGTTTGTTCACTGTTTATTACTTCAGTGGTTCTTGGCTCGGAAGAACGTGATACATTT GCCTATTAAATCACTTGATCAAGCGCGTCCACTAGGGGCTTTTCGTGAATTCGGAGTAACGAACCATTACTCGCCGGCACTTCTTCATCCTTTGAAGAAG TGTCCTCAGCCGTCACATGACTCTCCAGCTGAAGAAGTTTGGCAGATTATTAGTAATTTGAAAGTGAACCACACAACCGAGCTTGTCATCGACCGGCCGG CCGGCCGTTCTCTGCTTCATCCGGCGACAGAGAGATCGCCTTCTGATCAAAGCACGGAACCAAAAATGGAGAAAGGAGTAAAGAGATGGATCGTCGACAT CTCGAAGTGGAATCCATCTCCCGTCGACTTCTCACTCGCCGTCGCTCTCCTTCCTTGCCACGAACACTCCTCCATCAACAGGTTTGTGAAGGTGGAAGAT AAGAAGAGAGCGCTCGTTAGCCGGTTGCTTCAGTACAGTCTAGTGAACGAAGTCATTGGAATTCCTTCTGGCGAGATTGTGATCAAGCGCACATTGGAAG GAAAGCCCTATCTGGAATGTCACAGGGTTCAAGCTGGACTTCCCAACTTCAACTTCAATGTTTCCCATCATGGCTACTATGTAGCCATAGCATCTGAGCC TCTGTGTATAGTCGGGGTCGACATTGTTTCATTTACGAAACCGGAATCGGAGACGATTGGAATGTTCATCCGAGCCTTCAAGTCGTACTTCTCGAGACTC GAATGGGAGAACATCAATAAAGCTGGCGGCCCAGATGAAACTCTTGCCGAGTTCTACAGATACTGGTCCTTGAAGGAAGCATACGTAAAAGCCACAGGCA GCGGATTGGCAAACGAGTTAGACAAAGTAGAGTTCCGACACGATAACTGGACGAACATTACAATCTCCATTGACGGAAAGCTTGATGAACAATGGAGATT CTGGTTGCACGAGCTGCCGAAACGACATTGGCTTTCAATTGCAAGAGGCCATCCAAAGGCTGCTGTTGAGAGTTACAAGGCAACAATGGAACGACGAACA GAGTTTAGTGAAGAGGAGTTCGAAGAGAGCTTTCGACTTCCAAATGTAGGCATCGTTACAAGAACCGTGGAACAACTCGTTACGAGGCTCCGTGGAGTGG ATTCGGAGCACACAATTCGATGA
AA sequence Show only first row Show all	>Lus10008521 pacid=23177375 polypeptide=Lus10008521 locus=Lus10008521.g ID=Lus10008521.BGIv1.0 annot-version=v1.0 MERLASQRPIRGRLRPGAICTYGANDEGVLAIHQHQSINIRKVTSTNEFVHCLLLQWFLARKNVIHLPIKSLDQARPLGAFREFGVTNHYSPALLHPLKK CPQPSHDSPAEEVWQIISNLKVNHTTELVIDRPAGRSLLHPATERSPSDQSTEPKMEKGVKRWIVDISKWNPSPVDFSLAVALLPCHEHSSINRFVKVED KKRALVSRLLQYSLVNEVIGIPSGEIVIKRTLEGKPYLECHRVQAGLPNFNFNVSHHGYYVAIASEPLCIVGVDIVSFTKPESETIGMFIRAFKSYFSRL EWENINKAGGPDETLAEFYRYWSLKEAYVKATGSGLANELDKVEFRHDNWTNITISIDGKLDEQWRFWLHELPKRHWLSIARGHPKAAVESYKATMERRT EFSEEEFEESFRLPNVGIVTRTVEQLVTRLRGVDSEHTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	1.0	0.8884
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	2.0	0.8781
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	7.5	0.8416
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	8.9	0.8719
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	10.5	0.8564
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	13.4	0.8682
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	14.7	0.8777
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	16.2	0.8671
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	16.7	0.8379
AT5G56850			unknown protein		Lus10032679 [exp]	17.5	0.8595

Compare expression of checked genes

Lus10008521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.