Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 422 / 2e-150 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 418 / 1e-148 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G25810 359 / 2e-125 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT4G30270 356 / 2e-124 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 354 / 1e-123 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57560 351 / 2e-122 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57540 351 / 2e-122 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57550 349 / 1e-121 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G25820 342 / 1e-118 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT2G18800 325 / 9e-112 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004723 [exp] 548 / 0 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 425 / 1e-151 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10000678 [exp] 414 / 4e-147 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 410 / 2e-145 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 365 / 8e-128 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 362 / 1e-126 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10023221 [exp] 360 / 2e-125 AT3G23730 376 / 4e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 358 / 4e-125 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10020773 [exp] 358 / 7e-125 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 426 / 8e-152 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 417 / 1e-148 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 397 / 3e-140 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 395 / 1e-139 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 392 / 1e-138 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 385 / 1e-135 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.013G005700 [exp] 380 / 5e-133 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 376 / 3e-132 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 367 / 1e-128 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 363 / 5e-127 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10008522 pacid=23177354 polypeptide=Lus10008522 locus=Lus10008522.g ID=Lus10008522.BGIv1.0 annot-version=v1.0 ATGGGCAACTTTTCTACTCAAAGTCTTGTGCTTTGTGCTCTGGTTCTGACGGTGATCGGAGCCACCGGAGCCAATGGCGGAAGCTTCTACGACGATTTTG ATCTAACGTGGGGAGGACCACGGTCCAAGATTTTCGGAGGCGGCCAGATGCTGTCTCTGTCTCTGGATAAGGCGTCCGGGTCCGGATTCCAATCCAAGAA GGAGTACTTGTTCGGGAGGATCGACATGCAGCTTAAGCTCGTGGCCGGTAACTCCGCGGGCACCGTCACGGCTTATTACTTGTCGTCACAGGGTCCGACC CATGACGAAATTGATTTTGAATTCTTGGGGAATTCGAGCGGGGATCCTTATATTTTGCACACGAACGTGTTCGCTCTAGGGAAAGGAGGCAAAGAGCAAC AGTTTTATCTTTGGTTCGATCCGACGAGGAACTTCCACACTTATTCCATCGTTTGGAAGCCTCAACACATCATATTCCTGGTGGACAACACTCCGATCAG GGTGTTCAACAACGCGGAGAACCGAGGGGTGGCGTTCCCCAAGAACCAGCCGATGAGGATCTACTCGAGTCTATGGAACGCGGACGACTGGGCCACCCGG GGCGGTCTGGTCAAGACCGACTGGTCAAAGGCTCCATTCACTGCTTACTACAGGAACTTCAGAGTCACTACTACTAATGCTTCCCCTGTTTCATCTTCTT CCTCTGGCTCGTTTGGCAATGGCGATTGGCAGAGGAAGAACAACAATGGTGATCAGTTGGATGCTAACTCGAGGAGGAGGCTGAGATGGGTTCAGAAGAA TTTTATGATTTATAACTATTGTACTGATTTCAAACGGTTCCCTCAGGGGCTTCCTACTGAGTGTAAATGA
AA sequence Show only first row Show all	>Lus10008522 pacid=23177354 polypeptide=Lus10008522 locus=Lus10008522.g ID=Lus10008522.BGIv1.0 annot-version=v1.0 MGNFSTQSLVLCALVLTVIGATGANGGSFYDDFDLTWGGPRSKIFGGGQMLSLSLDKASGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPT HDEIDFEFLGNSSGDPYILHTNVFALGKGGKEQQFYLWFDPTRNFHTYSIVWKPQHIIFLVDNTPIRVFNNAENRGVAFPKNQPMRIYSSLWNADDWATR GGLVKTDWSKAPFTAYYRNFRVTTTNASPVSSSSSGSFGNGDWQRKNNNGDQLDANSRRRLRWVQKNFMIYNYCTDFKRFPQGLPTECK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	0	1
AT3G54880			unknown protein		Lus10013824 [exp]	8.9	0.7052
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	9.2	0.7210
					Lus10032489 [exp]	9.8	0.6680
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10005753 [exp]	10.8	0.7009
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10007986 [exp]	14.8	0.6393
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	16.3	0.7394
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10029598 [exp]	16.5	0.6833
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036548 [exp]	44.4	0.6445
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	49.5	0.6738
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013822 [exp]	60.7	0.6740

Compare expression of checked genes

Lus10008522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.