Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 86 / 2e-19 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 82 / 1e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 72 / 1e-14 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G16610 63 / 1e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G53600 57 / 1e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 56 / 3e-09 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G35280 50 / 7e-07 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT1G26610 49 / 1e-06 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28710 47 / 2e-06 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G49900 47 / 1e-05 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004724 [exp] 430 / 5e-153 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10028951 [exp] 182 / 4e-55 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10007474 [exp] 156 / 4e-45 AT3G60580 99 / 7e-24 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 69 / 3e-13 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 67 / 2e-12 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 60 / 4e-10 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 60 / 7e-10 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 58 / 4e-09 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 56 / 1e-08 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077200 [exp] 178 / 8e-54 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 163 / 6e-48 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 118 / 2e-30 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 117 / 3e-30 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 104 / 6e-26 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 60 / 6e-10 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.010G159600 [exp] 55 / 2e-08 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.014G017300 [exp] 47 / 4e-06 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.004G205300 [exp] 46 / 1e-05 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 46 / 2e-05 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008523 pacid=23177385 polypeptide=Lus10008523 locus=Lus10008523.g ID=Lus10008523.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGAAGAAGAATCACAAATGCAAGCTCTGTTTCAGAATCTTCCCCACCTCCAGATCCTTAACCGGCCACATGAAGAGAGCCCACCACCACC AACAACTCGGTGGCCGCAACGACAACTCGTCGTCATCCGCCTCCGAGTCGTATCTCTCGGCTGAGGCCGAGCTCGATGAAGTAGCTTACGAACTGCGGCA GAATCCGAGGAAGAGCTTTCGAGTTGCCGCAGATCCTTACTCAGACGAGAGCGAGACCGATTCGACTCGGAACCCAACTCGGCGGCGCTCTCAACGGACT CAGAAACTGAGTCAAAAGAAACGCCAACGTCCGCCGCCGGCGGAGGAGGAGCAGGAGCCGGCTAGCTCTGTTTCCGATGCTTCCCCTGAGGAAGAATTGG CGATGTTCCTGGTGATGATGTCGAGAGATGTGAATTGGAGGAAGAGGAATCGAAGATTCAGCAACGACGACGATGAAATTGAAGTGCGAGAAATTGAAAT GGCGAAGAAGGAAGATGAAGAAGTTCGAGAGATATCAAACTCAAGGGTTTATCGAAGAGGGATCAACAAATTGAAGTGCGAGAAATGTACGAAGCAGTTC CGATCCTCCCCGGCATTGGCGACCCACCGCCGAATCTGCTCTCTCAACACCGACGGTGGAGCCAACGCGGCGGCGGCGGAGAGGAGGAGGATTTTCCGGT GTCCGTACTGCTACAAGGTGTTCGGATCGGGTCAAGCTCTGGGCGGACACAAAAGATCGCATCTTTCTTCCACCACCGGCTCTTACCCTTCTCCAGCGGC GCAGCCGCCTGTGAAAAGCAGCGGCGGTCTCTTGGATCTCAACTTTCCGCCGGCTGCAACGGAAGACGACGATTACAGCGTGGTCTCCGATGCTTAA
AA sequence Show only first row Show all	>Lus10008523 pacid=23177385 polypeptide=Lus10008523 locus=Lus10008523.g ID=Lus10008523.BGIv1.0 annot-version=v1.0 MEEKKKNHKCKLCFRIFPTSRSLTGHMKRAHHHQQLGGRNDNSSSSASESYLSAEAELDEVAYELRQNPRKSFRVAADPYSDESETDSTRNPTRRRSQRT QKLSQKKRQRPPPAEEEQEPASSVSDASPEEELAMFLVMMSRDVNWRKRNRRFSNDDDEIEVREIEMAKKEDEEVREISNSRVYRRGINKLKCEKCTKQF RSSPALATHRRICSLNTDGGANAAAAERRRIFRCPYCYKVFGSGQALGGHKRSHLSSTTGSYPSPAAQPPVKSSGGLLDLNFPPAATEDDDYSVVSDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	0	1
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	1.0	0.9153
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	2.4	0.9020
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	4.5	0.8785
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10027859 [exp]	5.2	0.8572
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	5.9	0.8624
AT1G23850			unknown protein		Lus10030860 [exp]	6.0	0.9026
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	10.2	0.8622
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Lus10022547 [exp]	11.0	0.8455
AT2G46630			unknown protein		Lus10005994 [exp]	14.1	0.8727
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	14.9	0.8389

Compare expression of checked genes

Lus10008523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.