Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44980 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 55 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 52 / 5e-07 F-box/RNI-like superfamily protein (.1) AT1G60400 51 / 6e-07 F-box/RNI-like superfamily protein (.1) AT2G04230 50 / 1e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G13985 50 / 2e-06 FBD1 FBD-associated F-box protein (.1) AT3G26922 49 / 4e-06 F-box/RNI-like superfamily protein (.1) AT3G49030 48 / 8e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G80470 45 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56440 45 / 7e-05 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008517 [exp] 269 / 9e-87 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000726 [exp] 258 / 5e-82 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10008511 [exp] 254 / 1e-80 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000727 [exp] 237 / 9e-74 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10000728 [exp] 224 / 3e-69 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000729 [exp] 214 / 2e-64 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10004718 [exp] 171 / 4e-50 AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 96 / 2e-21 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 92 / 4e-20 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 117 / 3e-29 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 106 / 2e-25 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 93 / 1e-20 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 79 / 5e-16 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 78 / 2e-15 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 70 / 7e-13 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 47 / 1e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121500 [exp] 43 / 0.0003 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.014G163866 [exp] 42 / 0.0004 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 42 / 0.0007 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008524 pacid=23177365 polypeptide=Lus10008524 locus=Lus10008524.g ID=Lus10008524.BGIv1.0 annot-version=v1.0 ATGGCGGAGACGGCAGAACAAACTAACGCCGCCAACTCCGACAGGCTCAGCGCCCTTCCCGATGAAATCCTCATCAAGATACTAACCGCCGCCGATCTCG ACACGAGAACCTCAATCCAAACATGCCTATTGTCCCGCTCCTGGCGGAACCTCTGGAAATCACTCCTCGCCACCAAGCTCTCATTAAACTTCCCGAACTT AAGTTGCTTCACCCTTTCAGAATGGTACCGTTTCAAAGCGTTTGTTGAGAACGTGCTGTCGTTTGGCGACAAGGAGTTTTCCGGGGGCCTCGACGTCCTT TCTGTAACGGCAGACCTAGGATATGAGGGAGTTTGCAACTTATTGGGCCAGATCTTCCACCACGGACTGGCCCACCGGGCACGAACCGTCCAGATCGTGG CCCAAACCCCAAGCAACGGGTTGCCTCCCCATTTACTCGACCTGTTGGGGTCGGTCCAAAATCTCGAGATCACCGACTGGTTAGGTTTTGGCGCGTTACA AAAGCAATCGCGTGAATTCTTGGAGCTCAAGACACTACGTCTGTACCGATGCGAGATACTCTCGACTATGATGTCTAGCGAGTGCTACTGCGACGACCTG TTTGGTGGGATTCCGAATTTGACAAAATTGGAGTTGATCGAATGTCGGTTCAGGACTGGCCGTCCGGTTATAATTTCGGGTAGTAAGCTGGCCAGCATCG TGTTTGTATGTTCTAACGAGCCACATTCTCCTTCGTCTCAAACCGAAGTTACGATTAGTGCACCGAAGTTGAAGTACTTCAAGTGCAAGGGGGTGGACCC AGCTCAATTCACCAGTTTCGAACTTCCGTCGTTAGAATGTTTGGATATTGATGTACACCTGAATACCGATCCGAATCTGAACCAAGTGATGTTGGATTGT GTTAGCATGTTTAGCGCGTTCCGCAACGCGGAGCATGTGAAGCTGCACCCTAGCGCGATTACGGCGCTTACTATAGTTCCTGGCCTACTAGAAAAACAAG AGTCTCCATTTAAGAGAGTGAAGTGCTTGCAACTCTACGACAGTACTAGGAAGAGTGTAGCATTTACTAGCAGTGTGTTCAACTCTTTGATAAGTTACTT CTTCGACGTTTGCGTCGTACGAATGACTCTCTTCCATCGAATTTTCTCGAAACAATTAGGTACGACTAGTAAGGACGGCTATCAGCCGCCGGTGGTTATC TACAAGAGCGATCTAAATGATGAAAGGGCGTGA
AA sequence Show only first row Show all	>Lus10008524 pacid=23177365 polypeptide=Lus10008524 locus=Lus10008524.g ID=Lus10008524.BGIv1.0 annot-version=v1.0 MAETAEQTNAANSDRLSALPDEILIKILTAADLDTRTSIQTCLLSRSWRNLWKSLLATKLSLNFPNLSCFTLSEWYRFKAFVENVLSFGDKEFSGGLDVL SVTADLGYEGVCNLLGQIFHHGLAHRARTVQIVAQTPSNGLPPHLLDLLGSVQNLEITDWLGFGALQKQSREFLELKTLRLYRCEILSTMMSSECYCDDL FGGIPNLTKLELIECRFRTGRPVIISGSKLASIVFVCSNEPHSPSSQTEVTISAPKLKYFKCKGVDPAQFTSFELPSLECLDIDVHLNTDPNLNQVMLDC VSMFSAFRNAEHVKLHPSAITALTIVPGLLEKQESPFKRVKCLQLYDSTRKSVAFTSSVFNSLISYFFDVCVVRMTLFHRIFSKQLGTTSKDGYQPPVVI YKSDLNDERA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002398 [exp]	1.0	0.8890
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	1.7	0.7798
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002392 [exp]	3.2	0.8087
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	7.7	0.7760
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10009144 [exp]	17.5	0.6132
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	19.2	0.7081
					Lus10027052 [exp]	19.4	0.6627
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	22.4	0.7145
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	23.0	0.7682
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	23.7	0.7409

Compare expression of checked genes

Lus10008524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.