Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 42 / 0.0007 transmembrane receptors;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008526 [exp] 297 / 3e-92 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 276 / 3e-86 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002248 [exp] 258 / 5e-83 AT5G40060 42 / 0.001 Disease resistance protein (NBS-LRR class) family (.1) Lus10008516 [exp] 251 / 8e-79 AT4G27220 59 / 1e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10008519 [exp] 243 / 1e-72 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 228 / 4e-67 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 217 / 2e-63 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 204 / 6e-59 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002250 [exp] 166 / 2e-49 AT4G19510 51 / 5e-07 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052000 [exp] 55 / 3e-08 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 52 / 4e-07 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 51 / 8e-07 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 50 / 2e-06 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.008G220200 [exp] 50 / 2e-06 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 50 / 2e-06 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 49 / 2e-06 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 49 / 3e-06 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 49 / 4e-06 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 49 / 4e-06 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008525 pacid=23177389 polypeptide=Lus10008525 locus=Lus10008525.g ID=Lus10008525.BGIv1.0 annot-version=v1.0 ATGATAAAGAATGGGGATGATGGGGTGTTTAAAATGCACGACCAACTTAGAGATGTGGGTAGAGAAATTGTGAGACGAGAAGATATAGAGCGTCCGTGGA AGAGCAGTAGAATATGGTCGACGGAAGAAGGAATTGATGTCTTGTTGAACAAAAAGAGTTTAGATCTAGAAGTCTGGGATGTCTTCAAAACTCTTGGAGG TGATTTGGATGGGCTACAAGGGTTGAGATCATTGGAAATTCTTAGGATTCAGAAAGTAAATGGTTTAGTTCGGATCAAAGGGCTTAAGGATCTCTTGTGT TCTTCTACCTGCAGGTTGCGGAAATTAGAGATTGAAGCATGCCATGACCTCACTGAGATACTCCCATGCGAACTCGATGACCAAACAGTAGTAGTAGTCC CCTCTTTGGTAAAACTGACCATTAGGGATTGTCCACTGCTGGAGGTTGGGCCGATGATACGATCTCTCCCAAAGTTCCCAATGCTAGAGGACTTGAGACT CTCGGTGGCAAACATAACTAAAGAGGAGGATATGGATGTGATTGGATCCTTAGAAGAGCTAGTTAGGTTGGATCTGGAGTTAGACGATACATCTTCCTTA GAGAGGATAGCTTCCTTGTCGAAGCTGCAAGAGTTAAGGAAACTCAGAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCTT TGCGAAAGTTGATTTTAGAGGGTTGCACGTCGTTGGAGAGACTATGGCCTGATCAACAACAGGTGTTTAGTCTGGAGAAGCTGCTGGAGATCGACATCCA AAACTGCAAAAGCTTTAGTGTTGATCATCTCGATGCGCTCAAGACCAGTCTACCGCCCCATGTAACGATAAGATGTACCGATGATCAGCCTTACAGCGAC ATTTATGACACCGAAAGCGAAGAGGAATCGTAA
AA sequence Show only first row Show all	>Lus10008525 pacid=23177389 polypeptide=Lus10008525 locus=Lus10008525.g ID=Lus10008525.BGIv1.0 annot-version=v1.0 MIKNGDDGVFKMHDQLRDVGREIVRREDIERPWKSSRIWSTEEGIDVLLNKKSLDLEVWDVFKTLGGDLDGLQGLRSLEILRIQKVNGLVRIKGLKDLLC SSTCRLRKLEIEACHDLTEILPCELDDQTVVVVPSLVKLTIRDCPLLEVGPMIRSLPKFPMLEDLRLSVANITKEEDMDVIGSLEELVRLDLELDDTSSL ERIASLSKLQELRKLRVKVPSLREIEGLAELKSLRKLILEGCTSLERLWPDQQQVFSLEKLLEIDIQNCKSFSVDHLDALKTSLPPHVTIRCTDDQPYSD IYDTESEEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	3.7	0.8973
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	5.1	0.8726
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	9.6	0.8658
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	11.5	0.8622
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	11.6	0.8621
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	11.7	0.8380
AT1G22610			C2 calcium/lipid-binding plant...		Lus10010269 [exp]	12.2	0.7290
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10039986 [exp]	13.0	0.8081
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10022570 [exp]	13.6	0.7918
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	14.1	0.8592

Compare expression of checked genes

Lus10008525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.