Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11560 568 / 0 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 229 / 4e-69 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 226 / 2e-68 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 205 / 4e-60 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G48050 100 / 2e-21 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 100 / 2e-21 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G22140 61 / 3e-10 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 50 / 7e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G19020 47 / 4e-05 CMT2 chromomethylase 2 (.1) AT4G39100 43 / 0.0001 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008492 [exp] 1028 / 0 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10042137 [exp] 96 / 5e-20 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10033410 [exp] 86 / 5e-17 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10020020 [exp] 56 / 1e-08 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 53 / 2e-07 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10014315 [exp] 52 / 2e-06 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 50 / 4e-06 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 48 / 2e-05 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10014178 [exp] 46 / 6e-05 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104300 [exp] 731 / 0 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 707 / 0 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127300 [exp] 211 / 9e-65 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.015G072800 [exp] 100 / 1e-21 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 98 / 6e-21 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 98 / 7e-21 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 97 / 2e-20 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.002G226000 [exp] 55 / 3e-08 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 54 / 7e-08 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 52 / 2e-07 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain
Representative CDS sequence Show only first row Show all	>Lus10008527 pacid=23177368 polypeptide=Lus10008527 locus=Lus10008527.g ID=Lus10008527.BGIv1.0 annot-version=v1.0 ATGAGAAATCGGAGGTTTGCCCAGATCGACAGCGACGACGACGATGACCTTCCGCTGCGGACGCGTTCGTCGGCGAAATCGGAGGAATCCGGCCGTCGGA TGAAGAGGGTCTGCCTAGAAGAAGAGGAAGAGGCGGCACACGGGGAGGAGAACGGTGGTAAGCGTAGGAAGAAAGGGAAGCGGGAGGAGGATGAGGAAGA GGAAGAGGGTGAAGAAGAGCCTGTTGAGGAGGAAGAGGAGGAGGAAGAGGAAGAAGTTCAGGAGGATGCCAAGCCTGTAGGCGAACCTGTTAAGGTTTCT GGGAAGGGGAAAACCCGACGGACTCATTACGATGCGTTCGAATTCGACGGAATTCAATACGAACTGGAGGATCCTGTGCTTTTGACCCCGGAAGATGGGA AGCAAAAACCTTATGTGGCAATCATCAAGGATATCACTCAGACTAAAGATGGCAGTATGATGGTTACTGGGCAATGGTTTTATCGTCCAGATGAGGCTGA GAAAAGAGGCGGCGGAAACTGGCCATCGTCTGATACACGGGAGCTGTTCTATAGTTTCCATCTTGATGAGGTCCCTGCGGAATCTGTAATGCACAAGTGC GTGGTGCACTTCATTCCGCCTTACAAGCATATTCCTAAGCGGAAGCAACATCCCGGCTTTATTGTACAGAAAGTGTATGATACTGTACAGAAAAAGCTGT GGGAGCTTACTGATAAGGATTATGAAGATGAGAAGCAGCACGAGATTGATCTTCTTGTTCTAAAGACTCTTTCACGTATAGTAGATCTTCCAGACAAGGA GGATGAAGATTCTGGTCTTCCTAGTGAACCTGAAGATCAGTCAAAGCTAAAAAGACCCCCGAGGAGAAGGAATATTTCACCTCTGGATGTTTCTAGGGAG GAAGAGATGCCAACAAGGACAGATGGTCTCAGACCTGTGACACCAGGAAGCTGCCCGAGCAGTAATTCGGAGTACTATGCCATCTTGGTGAAGTTCAATG CATTGACAGGAGACAACCGCCGTGACAGGTGTTTGGAGAAGCTTCTTGAAAGTGTCCAGTTTGTGTGCAGTTCCACTAGTGGTACAGATGACAATGGTAA AGAAAAATCCAGTTCGAATGGGGAAAATATTGGAAAGGAGGAGAAAACCCAGGGAACTGCAATTGGTTCTCAACAGAAGAGCCCAAAGGATGGTAATTCT TTTCCCTGGCCAGATGCTGCCGTTCCTATTGTCCGTGCTCTTGAGCAGGTCACACATGAGACTCTGTCTGCGGACAAGTACAACCAGAAGTTGCGACAAC TTGTGTTCAATCTCAAGAACAACGAGCGGTTGGCTCAACGGCTGCTCAATGGAGAGTTAGGACCTTCCAAAATACTGGCCATGTCACCAACTGAGTTGAA GGAAGGATCAACGGCAGAGGAAACGAAGATTGTAGAGCCGGAGGAATCTGTGCCGATGCAGATGACTGATGCTCGTTGCTCGCGATGCAATGAGTTCAAA GTCGGTGTAAGGGACATCATTCAAGCAGGACACGGAGACCGCTATCAGCTAGAGTGCATTGGTTGCGGCAATTCCTGGTATGCTTCGAGGGACGAAGCAT CGGTGCTGACAATAGATGGGCCTGCTGCTTCGAAAAATGTAGTTGGGGCAGCACCATTGGCCACTGCGAAGTTCGATGAAGCAGAGAAGAAGCTGGCAAG TCCCCGAGAACCGGAGAAGGCAGCAACAGAACCGAGTGTTCCTGTACTAGAAACCCAGAAATCAATCGGCAAGAAGAACATCGATGAGAACAATGGAAAT GCTGCAACGAAGAATGATTCGGAGACTAAGTAA
AA sequence Show only first row Show all	>Lus10008527 pacid=23177368 polypeptide=Lus10008527 locus=Lus10008527.g ID=Lus10008527.BGIv1.0 annot-version=v1.0 MRNRRFAQIDSDDDDDLPLRTRSSAKSEESGRRMKRVCLEEEEEAAHGEENGGKRRKKGKREEDEEEEEGEEEPVEEEEEEEEEEVQEDAKPVGEPVKVS GKGKTRRTHYDAFEFDGIQYELEDPVLLTPEDGKQKPYVAIIKDITQTKDGSMMVTGQWFYRPDEAEKRGGGNWPSSDTRELFYSFHLDEVPAESVMHKC VVHFIPPYKHIPKRKQHPGFIVQKVYDTVQKKLWELTDKDYEDEKQHEIDLLVLKTLSRIVDLPDKEDEDSGLPSEPEDQSKLKRPPRRRNISPLDVSRE EEMPTRTDGLRPVTPGSCPSSNSEYYAILVKFNALTGDNRRDRCLEKLLESVQFVCSSTSGTDDNGKEKSSSNGENIGKEEKTQGTAIGSQQKSPKDGNS FPWPDAAVPIVRALEQVTHETLSADKYNQKLRQLVFNLKNNERLAQRLLNGELGPSKILAMSPTELKEGSTAEETKIVEPEESVPMQMTDARCSRCNEFK VGVRDIIQAGHGDRYQLECIGCGNSWYASRDEASVLTIDGPAASKNVVGAAPLATAKFDEAEKKLASPREPEKAATEPSVPVLETQKSIGKKNIDENNGN AATKNDSETK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	0	1
AT2G28105			unknown protein		Lus10021424 [exp]	2.4	0.8082
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	4.9	0.8070
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	6.2	0.7887
AT3G58110			unknown protein		Lus10039903 [exp]	7.0	0.7652
AT3G58110			unknown protein		Lus10002186 [exp]	9.5	0.7618
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	9.8	0.7522
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	10.1	0.6958
AT3G02220			unknown protein		Lus10019392 [exp]	12.2	0.7875
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	13.3	0.7577
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	13.4	0.7695

Compare expression of checked genes

Lus10008527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.