Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 87 / 1e-19 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 71 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 70 / 2e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 68 / 1e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 53 / 5e-08 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT5G32460 49 / 1e-06 Transcriptional factor B3 family protein (.1) AT4G31640 49 / 2e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT5G18090 47 / 4e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31610 46 / 1e-05 B3 REM1, ATREM1 REPRODUCTIVE MERISTEM 1, Transcriptional factor B3 family protein (.1) AT4G31650 45 / 2e-05 B3 REM6 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041961 [exp] 213 / 9e-69 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 206 / 5e-66 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 89 / 3e-21 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10008493 [exp] 77 / 1e-17 ND / Lus10025506 [exp] 77 / 2e-17 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 77 / 2e-16 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 77 / 4e-16 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10004924 [exp] 73 / 2e-15 AT3G18960 81 / 1e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 71 / 5e-15 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147000 [exp] 84 / 2e-18 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 84 / 3e-18 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 81 / 1e-17 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 77 / 6e-16 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 72 / 1e-14 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 65 / 1e-12 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 63 / 2e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 62 / 2e-11 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.018G124501 [exp] 48 / 2e-07 AT3G18990 59 / 3e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 51 / 3e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10008529 pacid=23177353 polypeptide=Lus10008529 locus=Lus10008529.g ID=Lus10008529.BGIv1.0 annot-version=v1.0 ATGAGGCAGAGGAGATGTTCTCCAAATTTCTTCAGGATCATGGATCAAAAGTACACACTTGATCCCAAGAAACTGGTTCTGCCAGTGAAATTCGTGGCAA ACTACGGCGAGGAGCTCGGAAAAGTAGTGACTTTCAATGTTGCTGATGGCAAAAAATGGAAGATCAGGGTCGGAAGAGTAGACGGGAGAACTTGGTTTGC GAAAGGGTGGTTAGCATTCGCAGCTTATTACTCGATCCGCTATGCCTATATGTTGGTGTTCAAGTATAATGGGAACTCATGCTTCAATGTTCGAGTTTAT GGTCCGCACACGGCCGAAATCGTTTACCCAACTGGGGGGGCTAGAATTCGGACATCAGTTGCTAACGACTTTGAAAAGATCGTTGAGAAGGCTAAACGGT CGGAGAAGAGGACCATCCAAGCTGCAATGGAGCTGAGTTTGAAGAATCCATCACTCACGCTGGTGATGAAACAGTACAACAACACCACACTCCCTGTTGG AGTAACATCTGCCCCCAGTGGCTGTGTGGATGAGCATCTTCTCAGCCCAGATTGCACCTACATGAAAGTGATCGATTCCAGCGGCGTCAAGGAGTGGGTG ATTCGGCTCAAACGGAGGGACCACCGGGAGATGTCTGCATGCTCGAGCTTTGTGGATCGCATAGAGTGTCTCATGAGAGCTCACACATCTTTCGTGTTTC AGCTCACTAAGGTTGATGTCGGAAAACTGTGGACTCCTTAA
AA sequence Show only first row Show all	>Lus10008529 pacid=23177353 polypeptide=Lus10008529 locus=Lus10008529.g ID=Lus10008529.BGIv1.0 annot-version=v1.0 MRQRRCSPNFFRIMDQKYTLDPKKLVLPVKFVANYGEELGKVVTFNVADGKKWKIRVGRVDGRTWFAKGWLAFAAYYSIRYAYMLVFKYNGNSCFNVRVY GPHTAEIVYPTGGARIRTSVANDFEKIVEKAKRSEKRTIQAAMELSLKNPSLTLVMKQYNNTTLPVGVTSAPSGCVDEHLLSPDCTYMKVIDSSGVKEWV IRLKRRDHREMSACSSFVDRIECLMRAHTSFVFQLTKVDVGKLWTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	2.0	0.9134
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	2.0	0.8866
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	6.7	0.8831
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	6.9	0.8810
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	7.1	0.8730
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10042531 [exp]	8.5	0.8481
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	11.7	0.8729
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	12.4	0.8481
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	12.4	0.8492
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	14.4	0.8690

Compare expression of checked genes

Lus10008529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.