Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63490 760 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G20400 230 / 6e-62 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G08620 215 / 2e-56 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G30810 211 / 3e-56 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 200 / 9e-53 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G46910 190 / 2e-49 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT2G38950 162 / 1e-40 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G04240 118 / 2e-26 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 109 / 1e-23 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008495 [exp] 2555 / 0 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10022024 [exp] 233 / 2e-61 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 232 / 6e-61 AT3G04490 1382 / 0.0 unknown protein Lus10008063 [exp] 223 / 2e-59 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10030988 [exp] 194 / 1e-50 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 194 / 2e-50 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10033903 [exp] 143 / 2e-34 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 131 / 2e-30 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10037989 [exp] 124 / 7e-28 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126600 [exp] 1420 / 0 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 229 / 8e-61 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.011G155100 [exp] 227 / 2e-60 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.019G018700 [exp] 226 / 1e-59 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 224 / 6e-59 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G096100 [exp] 192 / 9e-50 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.002G037300 [exp] 162 / 2e-40 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.001G137700 [exp] 160 / 9e-40 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.015G089000 [exp] 136 / 7e-32 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.008G037800 [exp] 122 / 2e-27 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] PF08429 [flax] [poplar] PLU-1 PLU-1-like protein
Representative CDS sequence Show only first row Show all	>Lus10008531 pacid=23177404 polypeptide=Lus10008531 locus=Lus10008531.g ID=Lus10008531.BGIv1.0 annot-version=v1.0 ATGGGGAAGGGGAGGCCAAGGGCGGTAGAGAAGGGAGTTCTAGGATCACAGAACTCGACCTCATCATCTTCATCGGAGGCATCGTCTCGGTCATTGGATG TCCCGCCTGCTCCTGTTTATTATCCGACTGAGGAGGAGTTCAAGGATCCGTTAGAGTATATTCACAAGATTAGGAATGAGGCAGAGAGGTACGGGATTTG TAGGATTGTGCCTCCAGAGGGATGGTCGCCGCCTCTTGCAATGGATTTAGATAGGTTTAGTTTCCCGACCAAGACTCAGGCCATTCACCTGTTGCAGGCT CGTCCCGCGTCGTGTGACTCGGAGACGTTTGAGTTGGAGTACACTAGGTTTCTAGAGGAGCATTGTGGGAAGAAGGTGAGGAAGAAGAGGGTGGTATTTG AAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGCGGTTAAGAGGTTTGGAGGATACGATAAGGTTTTGGATGAGAAGAAGTGGGGGGAGGTGTCTAG GTTTGTGAAGTCGGCATTTTGTTGGCACTTCGAAGACCACTGCTTTTACTCAATGAACTACCTACACTGGGGAGAGCCAAAGTGTTGGTACAGCATTCCT GGTAATGAAGCTGGTGCATTTGAGAAGGTAATGAAGGAAAGTCTTCCCGACCTGTTCGATGCACAACCTGATTTGCTTTTTCAGCTCGTCACTATGCTAA ATCCATCTGTCTTGCAAGAGAAGGGGGTCCCGGTATACAGCATACTTCAGGAGCCTGGAAATTTTGTCATCACTTTCCCTAGGTCCTACCATGGAGGTTT CAATTGTGGTTTGAACTGTGCAGAAGCTGTCAATTTTGCTCCTGCTGACTGGCTACCTCATGGTGGGTTCGGAGCCAAGCTGTATCAGATGTATCATAAG CCTGCTGTTTTATCTCATGAGGAGCTTCTTTGTGTTGTAGCCAAGGGTGATTATGATAGCAAAGCCTCGCCTCACTTGATGAAAGAGTTGCTTCGGGTGT ACACTAAAGAAAAATCATTAAGAGAGAAACTTTGGAAGAGCGGCATTGTCAGGACATCTTGCATGCCTACTCGGAAATTCCCTGAATATGTTGGTACTGA AGAGGATTCAACCTGTGTCATCTGCAAGCAATATCTATATCTCTCTGCCGTGTCTTGCCGCTGTAGGCGTTCTGCTTTTGTTTGTCTTGAGCATTGGGAG CGCTTATGTGAATGCAAGCCCAGTAGACGACGTCTTCATTATCGCCATACTCTTGCAGAGTTGCATACTTTGGTGCTTATGGTGGATAAACGTAGTTCTG AGGGGAGACCACAAGCAAGCTCTACACGCAAGCAGTTTCCTTGTACAAGTGATCTAAATGTCTTGACGAAGAAGGTCAAAGGTGTACAAGTCAGTCTACC CCAACTGGCTGAACAGTGGCTTCTACAATCGTGTAGTTTCCTTGAGAATCAGTATTCCAGTGACACATGCTTACGCTTGTTGAAAGAAGCTGAACAGTTT CTTTGGGCTGCTTCTGAGATGGATGCAGTGCGTGATGTTCTGAAGAGGTTGATTGCTGCTAAGACATGGTCAGAAGGGATAAGTGATTGTCTTCGCAAAA TTCAGAACTGGACCAGTGATAAAGAAAATGATTTGCAGAGAGTTCATATGGAACATGTCGATGAGCTACTGACCCTTGATCCTGTGCCCTGTGAGGTGCC CGGGCGTCACAAATTGCAGGAGCATGCAGATGAAGCTAAACTGTTGATTCAGGACATCGAGACTGCTCTATCATCGTGCTTAGAGATCTCTAACTTGGAG TCTGTTTACTCAAGAGCCTGTGAGTTCCCAATTCATGTAAAAGAAAGCGAGAAGCTGTCACAAAAAGTTTCATCGGCAAAGGTCTGGTTAGACCAAGTAA GAAAGGCTCTTGCGGGTGAATGTGCTTCTGATATGGATGTCAACAGTCTGCACAAGTTAAAGTTGGAGATATTGGAGCTTGAGGTTCAACTTCCAGAAGT AGAGATGCTTTCAGATCTGATAAAGAAGGCTGAATTATGTCAGATTCAGTGTACTCAAGCTCTACAAGCTCCTTTAATCCTAAAGGATGTTGCTGTGCTT ATTCAAGAATTCAGTAATCTTATTGTCAATGTACCGGAGCTGATGATTTTGAAGCAGTATCATGCTGAAGCAGTTTCCTGGATTTCTCGACGAGATGATG TTTTGATGAACGCCCATGAGAGGGAGGATCAAAACAAAGTTATTGAGGAACTAAATTGTTTAATAACAGATAGAGCTTCCTTGCGAATTTCAGTTGATGG ATTGCCTCTTCTTGAGACAGAGTTGAAAAAGGCTTGTTGGAGGGAAAAGGCTCTAAAGGCATATCACACCAAAATGCCTCTGGAGTTAATTCAGCAATTG GTGGCAGATGCAGCTGTGCTACAGATTGAGAGAGAGAACATTTATGTTCTCTTGTCTGATATGCTTGATGCTGCTCTTTCTTGGGAGGAAAATGCCAAAC AAGTTCTCTCAGATAGAGCTTCATTGTGCAAGTTTGAGGACCTCATAAGGAGTGCTGCAGACATAACTGTCATTTTACCATCCCTGGATGATGTCAAATG TGCTGTCTCGATGGCGAGCTGTTGGTTGAAGAAAGCTGAAGCATTTGTGGAGAGTTCTTCCTCAGCAGCTGATTGTTCTAATTCTTCACTCAAACTTGTT TTTTTGAAGGATTTGCTCGCACAATCAGACTCTCTAATGGTATCATTGACTGAATGCAAAAGGCTTCAGCTGATTCTGAGAAACTGTGAGGATTGGCAGC AGATAGCTCGCCCTGCACTCTGTGATGCTGAGTGTATATTTAATGTGGGCGATATGTTTCCGGACAATAGGAGTGTACTTATGTCAGAAATTCAACACTT ACATAGTAAAATGGAATCCATTAAAGAAGCTGGTTTTGCTCTTCGCTTTGACATTCCTGAAGTTCTAGAGGTTCAGAATGCATCATCCGCATTGCAATGG TGTGCCCGGGCTCTTTCCTTCTGCTCGGTTTCTTCTTCTTGGGAGGATGTCCAGAGTTTGATTGAAGATTCAAGTTGCCTTTCGGTTGCACACGCGTCGA GCAGGTTGTGTAGCTCTCTAATTGGTGGAGTTAAATGGCTTCTCAAAGCCTTAGAAGCAATGTCTTCGAGGACAAATTTTGAAAGATCTAGTTTCAGTCA TGCAGAAGAAGTACTTGCTGAATATCAATGTATTGACAATCTCTTTCCCATAGTTATGGATCAATTAGCAAAAGCTATTCTGAAGCACAGGCAGTGGAAA GACAGAATGGATAAGTTTCACAGCCTGGGCTCTGGGCTACAATCCTGGTCTGAGATGCTAGAACTCAGGGAACTTGGAAGGACTGCTGCCTTTGGTTGTA GAGAACTGGAGTTGATTTTATCAGAAGTAGAAAAAGTGGAGGACTGGAAACAGCAATGTGTTCAGAACATAGAAGAATGTTCTGACGACAAGGCATTGCT TGGCTCTTTACAGAAGATCAGTAGATCATTGGATCTATCTTTGTCTGTGTTTGGCAAGTCAGAGAGATGTGGAAGTAGTGTGTACATGTGTTGCACCAGG GATAAGGGCCTGGAGGCCATAATCTGCTCAAGCTGCAAAGACTGTTATCATCTGGAGTGTCTGGACCCAGATTTTGTCGACTCAGAAGCTTCAGCAGAGT ACATGTGTCGCTACTGTAAACTTTTCAGTAATGGGATAAAATCTCCAAATCCAGGCATTTACTTGGGAGGGAGAGAAGTAGAGTTAAGATTCTTAGTTGA ACTTTTGTCTATTTCTGACAGTTTCCCTGTGAGGATTGTTGAAGTAGGAGCTTTGCAAGAGATTGTGGAAAAGGCTCTCATGGTTAGAACATGTCTGAGA GAAGTTCTGGAATTTCTATCGTCATGCACGGATACCGATTTTAAAATGGTTTCTGAAAAGCTAGCTATTTCTTTGAAGGCTATAGAGGTGGCTGGCATCA ATGACCACGAAGTCCAACCCGACTTCCAGCTCGCTTTATCTAGACATTCATGGAGGGTTAGAGTTGACCGAATCTTGGTAGGTGGACTTAAGCCCACACT GAAGGACATTCATCACCTCATGGAAGAGGCGTTGAAAATGGATATAAGCTCTGAAGATAAATTTAGACGGAAGTTGTCTGAATTGAACGACAGCGTTTTG CAGTGGGTTGACCGAGCTAATAAGGCTTCAAACGATCATGGTGCTCTTGCTTTGGATAAAGTTTTCGAGCTCATTTCAGAGGTGGAGAATCTGCCAATTG TTTTAGAGGAGGAACTTAAGATGTTAAGGGCTAGAAGCATGTTGTACTGCATATGTAGAACACCGCTGGACAATAGACCAACCATCACTTGTACCAAATG TGAAGAACTGTACCATAAAGAATGTGTAAAGCTCGTTCATCCCCGGCAGAAGCTGTACGTTTGTGCCGCGTGTAGAACTGGATCAGAACCAGAAGAAGAG CTGCAGATGGAAGAAGACGAACAGCCATTTTCATCGGCGAATAAAGTGAAATCGGTGGAGGTGGAGCCGAAGACGCCATCTCCCCGTCCACAGCACGTGA AGACGGGGAGTTTAACGATGAAGAAGCGACAGCGACGACGAGCGAAGAAGAAGAGTGGCGGTGAGTGTGGCGATGAGAAGAATAATGAAGTCGGAATCGA TCGATTGTGGTGGCAAAATAGGAAGCCCTTCAGGAGAGCTGCTAAGAAACGGACTCAGCTTCACTCACTCTCGCAATTGTTTATTGGAAACCAATAA
AA sequence Show only first row Show all	>Lus10008531 pacid=23177404 polypeptide=Lus10008531 locus=Lus10008531.g ID=Lus10008531.BGIv1.0 annot-version=v1.0 MGKGRPRAVEKGVLGSQNSTSSSSSEASSRSLDVPPAPVYYPTEEEFKDPLEYIHKIRNEAERYGICRIVPPEGWSPPLAMDLDRFSFPTKTQAIHLLQA RPASCDSETFELEYTRFLEEHCGKKVRKKRVVFEGEDLDLCKLFNAVKRFGGYDKVLDEKKWGEVSRFVKSAFCWHFEDHCFYSMNYLHWGEPKCWYSIP GNEAGAFEKVMKESLPDLFDAQPDLLFQLVTMLNPSVLQEKGVPVYSILQEPGNFVITFPRSYHGGFNCGLNCAEAVNFAPADWLPHGGFGAKLYQMYHK PAVLSHEELLCVVAKGDYDSKASPHLMKELLRVYTKEKSLREKLWKSGIVRTSCMPTRKFPEYVGTEEDSTCVICKQYLYLSAVSCRCRRSAFVCLEHWE RLCECKPSRRRLHYRHTLAELHTLVLMVDKRSSEGRPQASSTRKQFPCTSDLNVLTKKVKGVQVSLPQLAEQWLLQSCSFLENQYSSDTCLRLLKEAEQF LWAASEMDAVRDVLKRLIAAKTWSEGISDCLRKIQNWTSDKENDLQRVHMEHVDELLTLDPVPCEVPGRHKLQEHADEAKLLIQDIETALSSCLEISNLE SVYSRACEFPIHVKESEKLSQKVSSAKVWLDQVRKALAGECASDMDVNSLHKLKLEILELEVQLPEVEMLSDLIKKAELCQIQCTQALQAPLILKDVAVL IQEFSNLIVNVPELMILKQYHAEAVSWISRRDDVLMNAHEREDQNKVIEELNCLITDRASLRISVDGLPLLETELKKACWREKALKAYHTKMPLELIQQL VADAAVLQIERENIYVLLSDMLDAALSWEENAKQVLSDRASLCKFEDLIRSAADITVILPSLDDVKCAVSMASCWLKKAEAFVESSSSAADCSNSSLKLV FLKDLLAQSDSLMVSLTECKRLQLILRNCEDWQQIARPALCDAECIFNVGDMFPDNRSVLMSEIQHLHSKMESIKEAGFALRFDIPEVLEVQNASSALQW CARALSFCSVSSSWEDVQSLIEDSSCLSVAHASSRLCSSLIGGVKWLLKALEAMSSRTNFERSSFSHAEEVLAEYQCIDNLFPIVMDQLAKAILKHRQWK DRMDKFHSLGSGLQSWSEMLELRELGRTAAFGCRELELILSEVEKVEDWKQQCVQNIEECSDDKALLGSLQKISRSLDLSLSVFGKSERCGSSVYMCCTR DKGLEAIICSSCKDCYHLECLDPDFVDSEASAEYMCRYCKLFSNGIKSPNPGIYLGGREVELRFLVELLSISDSFPVRIVEVGALQEIVEKALMVRTCLR EVLEFLSSCTDTDFKMVSEKLAISLKAIEVAGINDHEVQPDFQLALSRHSWRVRVDRILVGGLKPTLKDIHHLMEEALKMDISSEDKFRRKLSELNDSVL QWVDRANKASNDHGALALDKVFELISEVENLPIVLEEELKMLRARSMLYCICRTPLDNRPTITCTKCEELYHKECVKLVHPRQKLYVCAACRTGSEPEEE LQMEEDEQPFSSANKVKSVEVEPKTPSPRPQHVKTGSLTMKKRQRRRAKKKSGGECGDEKNNEVGIDRLWWQNRKPFRRAAKKRTQLHSLSQLFIGNQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	0	1
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	1.0	0.8932
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	2.0	0.8739
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	3.0	0.8548
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	3.0	0.8125
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	11.1	0.8390
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	12.0	0.8089
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	13.6	0.8211
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	17.9	0.8341
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	19.4	0.7996
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	20.7	0.8117

Compare expression of checked genes

Lus10008531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.