Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63470 278 / 2e-91 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 238 / 8e-76 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 199 / 9e-61 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 179 / 5e-53 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 173 / 5e-51 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 173 / 7e-51 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G17950 152 / 2e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 145 / 8e-40 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 141 / 6e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 138 / 3e-37 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008533 [exp] 548 / 0 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008497 [exp] 481 / 4e-172 AT1G63470 225 / 4e-71 AT hook motif DNA-binding family protein (.1) Lus10001997 [exp] 313 / 7e-106 AT1G63470 174 / 1e-51 AT hook motif DNA-binding family protein (.1) Lus10037858 [exp] 191 / 9e-58 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 187 / 2e-56 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10040085 [exp] 161 / 5e-46 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10030962 [exp] 160 / 2e-45 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 159 / 2e-45 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10004022 [exp] 156 / 2e-44 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126500 [exp] 330 / 7e-112 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.001G104900 [exp] 308 / 2e-103 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 228 / 2e-72 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 226 / 1e-71 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G148600 [exp] 176 / 2e-52 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G143500 [exp] 177 / 5e-52 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 174 / 9e-52 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 173 / 1e-50 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 172 / 2e-50 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 168 / 6e-49 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10008535 pacid=23177379 polypeptide=Lus10008535 locus=Lus10008535.g ID=Lus10008535.BGIv1.0 annot-version=v1.0 ATGGCATTATCTAGCGGGTCAAATCCGTATTACCTCCAGAGAGGGCCTAGTTATGGTGGGTCTGGTGGGTACGGGCCACAAGATTACGGGTCACAAACTG GTCCGTTGCATCCCCCACCACCACAATTCAGGAACTCTCCAACCCCAAATTTCCAGATTCAGAACAATGCCAGCAGGCCTGGATCATCATACTCAATAGA CCACTCAAATGTGGTGGTGAATTCTTCTTCTGGTCATGGACATGGAATTGATATGAGTGCTCCTCCCCCTCCTATGAGTGAGCAGCCCGTGAAGAAGAAG AGAGGGAGGCCTAGGAAGTATGCCCCAGATGGCCAGGTCTCACTTGGTTTGTCTCCTTTGCTGATCAAGCCTAAAAAATCTTCTTCAGAGGGTGATCCAA TGAGCCCTTCTAAGCGTAAAGGACGACCTCCCGGCACTGGGAGGAAGCAACGGCTGGCTGATCTAGGTGAATGGATGAATAAATCTGCCGGTCTGGCTTT CGCACCACATGTGATCAGAATTCTGGCTGGGGAGGACATTGTTGCTAAAATACTGTCATTTGCACAGCAGAGGCCTAGAGCTGTCTGTATCTTGTCTGGC ACTGGTACAGCTTCCTCTGTAAGCTTGCGTCAACCAGCATCTGCGGAGCCAACTGCCACATATGAGGGCCGATTCCAGATACTGTGCTTGTCAGGTTCCT ACTTGGTTGCTGAAAATGGAGGTCCCACTGACCGAACAGGTGGAATGAGCGCTTCGCTTTCAACTCCTGATGGCCATGTCATCGGTGGCGCAATCGGTAT GCTTACTGCCGCAAGCCTAGTACAGGTGGTGATCTGTAGTTTTGTATATGGTAGTATCAAGAAGCCAGAAAGACCAGTTGGACGACCAAAGAGTGATAAA AGTCAACGCAGCAACGAGAAATTAGCCATTGACGCCCCTGACAGCGCTCCTACTACTGCAACGAACGAACATCATCATTACACGCCTTCTCCCATGGGGG TCTGGCCAGGCACCCGGTCTGCCGATCTGAGAAACAACCCCCACACGGGCATTGACTTAACACGAGGCTGA
AA sequence Show only first row Show all	>Lus10008535 pacid=23177379 polypeptide=Lus10008535 locus=Lus10008535.g ID=Lus10008535.BGIv1.0 annot-version=v1.0 MALSSGSNPYYLQRGPSYGGSGGYGPQDYGSQTGPLHPPPPQFRNSPTPNFQIQNNASRPGSSYSIDHSNVVVNSSSGHGHGIDMSAPPPPMSEQPVKKK RGRPRKYAPDGQVSLGLSPLLIKPKKSSSEGDPMSPSKRKGRPPGTGRKQRLADLGEWMNKSAGLAFAPHVIRILAGEDIVAKILSFAQQRPRAVCILSG TGTASSVSLRQPASAEPTATYEGRFQILCLSGSYLVAENGGPTDRTGGMSASLSTPDGHVIGGAIGMLTAASLVQVVICSFVYGSIKKPERPVGRPKSDK SQRSNEKLAIDAPDSAPTTATNEHHHYTPSPMGVWPGTRSADLRNNPHTGIDLTRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	3.0	0.9501
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008533 [exp]	4.2	0.9297
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	4.9	0.9431
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	5.9	0.9297
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	6.0	0.9143
AT5G03670			unknown protein		Lus10027723 [exp]	6.1	0.8776
AT1G79060			unknown protein		Lus10031795 [exp]	7.2	0.9315
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	7.3	0.9337
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	7.9	0.9237
AT1G79060			unknown protein		Lus10031218 [exp]	7.9	0.9279

Compare expression of checked genes

Lus10008535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.