Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006341 [exp] 530 / 0 ND / Lus10008498 [exp] 355 / 2e-122 ND / Lus10038309 [exp] 327 / 1e-107 ND / Lus10022836 [exp] 310 / 7e-103 ND / Lus10024122 [exp] 291 / 6e-94 ND / Lus10005392 [exp] 291 / 1e-93 ND / Lus10029057 [exp] 266 / 4e-84 ND / Lus10005393 [exp] 260 / 7e-83 ND / Lus10023559 [exp] 255 / 4e-80 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047300 [exp] 394 / 1e-133 ND / Potri.001G388100 [exp] 357 / 3e-120 ND / Potri.001G388450 [exp] 357 / 9e-120 ND / Potri.001G388200 [exp] 357 / 1e-119 ND / Potri.001G388600 [exp] 356 / 3e-119 ND / Potri.001G388801 [exp] 356 / 5e-119 ND / Potri.001G387900 [exp] 354 / 2e-118 ND / Potri.011G108300 [exp] 353 / 3e-118 ND / Potri.001G388900 [exp] 332 / 5e-110 ND / Potri.011G108200 [exp] 315 / 2e-103 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10008536 pacid=23177381 polypeptide=Lus10008536 locus=Lus10008536.g ID=Lus10008536.BGIv1.0 annot-version=v1.0 ATGGCAATGTCAACCCTAATGGCAATTTTTCTACTTCTTCTCCACACAAGCACCATTCTAGTTTCTCAGCCGATAGTCACAGGGAAATGTGGCTCTCCCA AACTCCCTCTTGGAGTTCCTCCTATGACGTGCTGCCTTCAACTCCAACCCACAGAATACCACACTTTCACCCATTCTTCGGACTCACCGGCACGAGTCCG ACTAGCGGCTCACTTAGTGGATCGTGTGTACGTCCAGAAGTACAAGCGAGCCGTAGAGCTGATGAAGGCACTCCCCTCGACAGATCCAAGATCCTTCTTT CAGCAGGCGAATCTACATTGTGCCTATTGCAACGAGGCTTACAGACAGAGTGGCTTTCGCGACCTACCGGTCCAGATTCACAACTCCTGGCTGTTCTACC CGTGGCATAGATTCTACCTTTACTTCTACGAGAGGATCCTAGGAAAACTGATCCGGGATCCAACATTCGGTTTGCCTTTTTGGAATTGGGATGCTCCGGA AGGGATGCAAATGCCGTCCATTTACACAAACGATCCTAGGCGAAACCCCTACCACCAACCACCAACCTTAATCACCTTGGATTGGGGCTTCCACAATTCC GAGAACACAACGGACCAGGAGCGCATTGCAAGCAACGTCGGTTTCATGCATGGACAAATGGTTGGATCTATCGGGAACACCTCCGAGTTTCTTGGGATGC CATATCGGGCGGGGGATCAACCTCATCCACCGCAATTTGGCGGTTCCATAGAGAGGAAGCCTCATGGTCGGGTGCACGAATGGACCGGAGACAACAGTAC GGCCCATTTGGAAGATATGGGATCGTTCTACACTTCAGGGAGGGATCCTATGTTTTTCGCCCACCACGCTAACGTAGACCGGCTGTGGACTTTGTGGAAG AGTATAGGAGGAGTAGATTATGCAAGTGATGATTGGCTCAACTCAACCTTCCTGTTCCATGACGAAGATGCTCGTCCTGTTCGGGTGAAGGTGAGTGATT GCCTTGACGAGAAAAACTTAGGTTATGAGTATGAAACTGTCGACATCCCTTGGATTTGA
AA sequence Show only first row Show all	>Lus10008536 pacid=23177381 polypeptide=Lus10008536 locus=Lus10008536.g ID=Lus10008536.BGIv1.0 annot-version=v1.0 MAMSTLMAIFLLLLHTSTILVSQPIVTGKCGSPKLPLGVPPMTCCLQLQPTEYHTFTHSSDSPARVRLAAHLVDRVYVQKYKRAVELMKALPSTDPRSFF QQANLHCAYCNEAYRQSGFRDLPVQIHNSWLFYPWHRFYLYFYERILGKLIRDPTFGLPFWNWDAPEGMQMPSIYTNDPRRNPYHQPPTLITLDWGFHNS ENTTDQERIASNVGFMHGQMVGSIGNTSEFLGMPYRAGDQPHPPQFGGSIERKPHGRVHEWTGDNSTAHLEDMGSFYTSGRDPMFFAHHANVDRLWTLWK SIGGVDYASDDWLNSTFLFHDEDARPVRVKVSDCLDEKNLGYEYETVDIPWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008536 [exp]	0	1
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	1.0	0.8395
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	2.4	0.8244
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	2.8	0.7762
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	5.7	0.7583
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	13.4	0.8027
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	14.0	0.7585
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	15.5	0.7534
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	22.2	0.7410
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	23.9	0.7198
AT5G41720			unknown protein		Lus10006473 [exp]	24.3	0.7351

Compare expression of checked genes

Lus10008536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.