Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11600 299 / 1e-104 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT1G63460 250 / 2e-86 ATGPX8 glutathione peroxidase 8 (.1) AT4G31870 251 / 1e-85 ATGPX7 glutathione peroxidase 7 (.1) AT2G31570 243 / 2e-83 ATGPX2 glutathione peroxidase 2 (.1) AT2G25080 243 / 1e-82 ATGPX1 glutathione peroxidase 1 (.1) AT3G63080 238 / 3e-81 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G43350 238 / 5e-81 ATGPX3 glutathione peroxidase 3 (.1.2) AT2G48150 232 / 6e-79 ATGPX4 glutathione peroxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008499 [exp] 349 / 3e-124 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008022 [exp] 316 / 4e-112 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10000603 [exp] 271 / 1e-94 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10008023 [exp] 258 / 6e-88 AT1G63460 265 / 9e-91 glutathione peroxidase 8 (.1) Lus10027021 [exp] 252 / 8e-87 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10000601 [exp] 249 / 9e-86 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10042418 [exp] 249 / 7e-85 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10026887 [exp] 248 / 4e-84 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10029651 [exp] 244 / 1e-83 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126100 [exp] 310 / 5e-109 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 307 / 1e-108 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 271 / 2e-94 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.007G126600 [exp] 261 / 6e-90 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.006G265400 [exp] 247 / 4e-84 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 235 / 3e-80 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.018G017500 [exp] 164 / 2e-52 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008537 pacid=23177362 polypeptide=Lus10008537 locus=Lus10008537.g ID=Lus10008537.BGIv1.0 annot-version=v1.0 ATGGCCAGCAACTCCAAAGCTCCTCAGTCCATTTACGACTTCACTGTCAAGGACGCTAGAGGGAATGATGTTGATCTCAGTACTTACAAGGGCAAAGTTC TTTTGATTGTCAATGTCGCCTCCCAATGTGGCTTGACCAATTCGAATTACACTGAGCTGACTGAGCTGTACAAGAAATACAAAGATCAAGGCCTAGAGAT CTTGGCTTTCCCTTGCAATCAGTTTGGATCTCAGGAACCTGGAAGCAACGAGCAAATCATGGAGTTTGCTTGTACTCGCTTCAAGGCCGAGTACCCCATT TTCGACAAGGTTGATGTGAACGGGAACAATGCTGCTCCAATCTACAAGTTCCTCAAGTCAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAGTGGAACT TTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTCGATCGCTATGCTCCTACTACCTCCCCTCTCAGCTTCGAGAAAGATGTGAAAAAACTGCTTGG GGTTGCCTAG
AA sequence Show only first row Show all	>Lus10008537 pacid=23177362 polypeptide=Lus10008537 locus=Lus10008537.g ID=Lus10008537.BGIv1.0 annot-version=v1.0 MASNSKAPQSIYDFTVKDARGNDVDLSTYKGKVLLIVNVASQCGLTNSNYTELTELYKKYKDQGLEILAFPCNQFGSQEPGSNEQIMEFACTRFKAEYPI FDKVDVNGNNAAPIYKFLKSSKGGLFGDGIKWNFAKFLINKEGQVVDRYAPTTSPLSFEKDVKKLLGVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	0	1
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	2.4	0.9073
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	15.2	0.9094
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	15.7	0.9086
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	20.7	0.8651
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	26.1	0.8916
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	27.3	0.8857
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	27.7	0.8714
AT2G18210			unknown protein		Lus10041771 [exp]	29.7	0.9051
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10001577 [exp]	31.5	0.8725
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	33.3	0.8505

Compare expression of checked genes

Lus10008537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.