Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 160 / 1e-45 O-methyltransferase family protein (.1) AT4G35150 146 / 8e-41 O-methyltransferase family protein (.1) AT3G53140 118 / 4e-30 O-methyltransferase family protein (.1) AT1G51990 118 / 5e-30 O-methyltransferase family protein (.1.2) AT5G54160 116 / 4e-29 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 114 / 1e-28 O-methyltransferase family protein (.1) AT5G53810 109 / 1e-26 O-methyltransferase family protein (.1) AT1G33030 108 / 2e-26 O-methyltransferase family protein (.1) AT5G37170 91 / 2e-20 O-methyltransferase family protein (.1) AT1G21130 91 / 4e-20 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017695 [exp] 372 / 8e-130 AT4G35150 140 / 6e-40 O-methyltransferase family protein (.1) Lus10033656 [exp] 285 / 1e-93 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10033655 [exp] 284 / 1e-93 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10018628 [exp] 282 / 1e-92 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017699 [exp] 281 / 2e-92 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033653 [exp] 281 / 2e-92 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10039744 [exp] 279 / 2e-91 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10018526 [exp] 272 / 1e-88 AT4G35160 176 / 1e-51 O-methyltransferase family protein (.1) Lus10018629 [exp] 263 / 2e-85 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 292 / 8e-97 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 291 / 1e-96 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 283 / 4e-93 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 281 / 2e-92 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 280 / 7e-92 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 280 / 7e-92 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 277 / 6e-91 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 276 / 1e-90 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 267 / 7e-87 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 258 / 2e-83 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10008538 pacid=23177369 polypeptide=Lus10008538 locus=Lus10008538.g ID=Lus10008538.BGIv1.0 annot-version=v1.0 ATGGATTCCTACGAGGAGAGGCTAGCAGCTCAAGCTCACATATGGAGCTGGTCATTCATCCAAATCATCTCCATGGGCATAAAATGCGTCGTCGAGCTTG GAGTCCCAGATGCCTTAAACAACCATGGCGGCTCTGCCGTCTCATTGGCCACCCTCATCTCCTCTATCAACATCCCTCCTTCCAAGACCGAGCCCTTCCG TTGCATCATGCGCCTCCTTACTCACTCGGCTGGTTTCTTCAATTCCGAAAAGCGAGTGAATAAGGAAGAAGTTGGAGACGAGGAGGAGGAGGAAGAGTTC TTCTCCTTAAACCCTTCATCGCGACTTCTGCTCAACAAAAGTGGCGAAGAAGGAGGAAAGCAAACACCAAGCGTGCTCTTCTTCTTCCAGCCCATGATGC AGCACCCGTGGACATTTTTATCCACGTGGCTACGCGACGAGGGTAAGCGGACCCCATTTGAGATAGCAAACGGGACTGCGTCGTTTTGGGATTACATAAA GTGTGACGACCCTTCAGGACAGTTGATAACTTCTTTCTACGATACAATGATCAACGATTCGAAGATGATAGGGGACGTCGTCGTTTCCAGGTGCAAGGAA GTGTTCGAAGGGGTGGCGTCATTGGTTGACGTGGGCGGTGGGACCGGTGAGATGGCGGCTGCCATTAAGAAAGGATTTCCAGGGATTAAGTGCACCGTTT TGGATCTTCCACATGTGGTAAAGGATTTGGAGAAGAATGATAAAAATAATAATAATTTAGAATTTGTTGGTGGGGATATGTTTGTTAATTTGCCGGCGGC GGATGCTCTTTTGCTGAAGTGTGTTTTTCACGATTGGGACGAGGAGAATTGCATAAAGATACTCAAGGTCTGCAAAGAAGCAATCACGTCATCAAAAGAT GGTGGGAAGCTCATAATCATAGATATGGTGGTCGATGAAAAGAGGTTCGGTGAACCGAAATTTGGACAAGTGCAGCTGTGCTTCGATCTCTTAATGATGG CGTTTTTCAACGGGAAGGAACGAACCGAGAAACAGTGGAAGAAACTTTTCTTCGCCGCCGGCTTCTCTAGCTACAAAATCTCACCGGTGTTGGGTCCTAG GTCTCTCATTGAAGTTTTTCCTTAA
AA sequence Show only first row Show all	>Lus10008538 pacid=23177369 polypeptide=Lus10008538 locus=Lus10008538.g ID=Lus10008538.BGIv1.0 annot-version=v1.0 MDSYEERLAAQAHIWSWSFIQIISMGIKCVVELGVPDALNNHGGSAVSLATLISSINIPPSKTEPFRCIMRLLTHSAGFFNSEKRVNKEEVGDEEEEEEF FSLNPSSRLLLNKSGEEGGKQTPSVLFFFQPMMQHPWTFLSTWLRDEGKRTPFEIANGTASFWDYIKCDDPSGQLITSFYDTMINDSKMIGDVVVSRCKE VFEGVASLVDVGGGTGEMAAAIKKGFPGIKCTVLDLPHVVKDLEKNDKNNNNLEFVGGDMFVNLPAADALLLKCVFHDWDEENCIKILKVCKEAITSSKD GGKLIIIDMVVDEKRFGEPKFGQVQLCFDLLMMAFFNGKERTEKQWKKLFFAAGFSSYKISPVLGPRSLIEVFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	1.7	0.9679
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10041744 [exp]	7.3	0.8716
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	7.6	0.9513
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.6	0.9432
					Lus10006918 [exp]	11.1	0.9432
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	11.5	0.8866
					Lus10007508 [exp]	12.4	0.9432
					Lus10035708 [exp]	12.5	0.7538
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	13.0	0.8929
					Lus10025503 [exp]	13.1	0.8894

Compare expression of checked genes

Lus10008538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.