Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 371 / 7e-122 Major facilitator superfamily protein (.1) AT3G16180 360 / 1e-117 Major facilitator superfamily protein (.1) AT1G69870 305 / 5e-96 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 266 / 9e-82 NRT1.6 nitrate transporter 1.6 (.1) AT5G62680 265 / 8e-81 Major facilitator superfamily protein (.1) AT3G47960 263 / 7e-80 Major facilitator superfamily protein (.1) AT1G18880 260 / 3e-79 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G28470 255 / 7e-78 Major facilitator superfamily protein (.1) AT1G62200 249 / 3e-75 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G68570 246 / 4e-74 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020101 [exp] 675 / 0 AT1G52190 360 / 2e-117 Major facilitator superfamily protein (.1) Lus10023663 [exp] 438 / 9e-148 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 395 / 9e-131 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 374 / 2e-122 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10036705 [exp] 298 / 2e-93 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10037221 [exp] 298 / 4e-93 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 295 / 2e-92 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037896 [exp] 278 / 4e-86 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10036669 [exp] 277 / 2e-85 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087500 [exp] 421 / 4e-141 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 400 / 2e-133 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 363 / 4e-119 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 324 / 4e-104 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 323 / 2e-103 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 322 / 4e-103 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 317 / 2e-101 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 315 / 3e-100 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 314 / 5e-100 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 308 / 2e-97 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10008539 pacid=23177356 polypeptide=Lus10008539 locus=Lus10008539.g ID=Lus10008539.BGIv1.0 annot-version=v1.0 ATGTCAGCCAACGACACTAAAACCGCTAATAAGGCGCCCGAGGCCGAGGTACTCATACATGTCGATGTCGTCAGGATAAAGGGCGGTTGGAGAACGTTGC CCTTCATCATAGCAAACGAGATACTAGAGAAGGTAGCCAGCATGGGGCTCGTACCAGTTTGTATCCCCTACCTAAGCAAAGAATACTTTCTCGACATTGG TGGGGTCTCGGCCTTCGTTCTAGTTTCAGGAGCAGCCGCCAACTTGACCCCGATTTTCGGAGCCCTAGCCTCGAACTTCTACGGCAAATTTCGAGTTATA GTCGCAGGGACTGCAATCACACTTGTCGGTATGTTAATTTTGTGGATTACCTCTGTGGTCCACGCGCTAAGACCGGGTCATGTGTGCGACGACTCGATGC ACTGCCCGAGGGGAGCAAAAATGTGGAGGCTCATTCTCCTCTTTTCCTCATTTGCCATCATGGCAAGTGGGGCCGGTGGGATTAGGCCGTGCTCGCCATC ATTTGGAGCTGATCAAATCCACGACCCCCGTGATCCAAACAATCTGAGAACCATTGAGGGGTATTATGGCTGGTACTACTCATCGGTGGCTATTTCGATC ATGGTCTCCGTATTGGTCATGTCGGAAATCCAGGAACACGTAGGGTGGCTAACGCTGTTTGCCATCCCGCCTGCCCTTATGTTTCTCTCCTTTACTTTCT TCATGATGGGATCCTCTCGGTATGTGAAGGTCTCGACGAAGTACTCCGACTCGGGGAGCGGTATCTGCAGGGTTATCATAGCGGCGTGGAGAAGGAGACG ACTGCCCCTCCCCCAACCCGGTGACGATCAAGCTAGGTGGTCCTACCCGGAGAGGTCCACTTTCGTCCATCCCACAAATGGTTTAAGCATTTTGAACCGG GCTTGCTTGATGACCGCGGGTGAGGAGGCTAGAAACCCGGCCACTTGTTTGTGTACAGTTCAAGAGGTGGAGGAGTTGAAAGCTCTCATCTCCGTGATCC CCATCTGGTCAACAGGGATCATCATAACAGTGGCCAACACACCGGGCGCCTTCCCAAACTATCAAGCCCAGGCCATGGACCGCCACATCGGCCTCCTAAA CCTAACCCCAGCCGCCTACATAATCTTCAGCGTCATCACAATGACACTATGGCTAGCCCTCTATAACCAAACAATCGTCCCACTACTTGCCCGACTCACC TCTAACAACCTCCCTAACGGCATTCCTCCTCGAATCCGGATGGCCATGGGACTCGCCATGTCCTGCATCGCCAATGTGGTCGCGGGTTTCGTGGAGCATC GTCGACGTGTGGTCCCCAAGGGGACCATGTCCGGGAACTGGTTGATCCTGCAATTTTCTCTAATGGGACTCGCCGAGGCATTCTACATGTTGGGCCAACT CGACTTCTTCAACTCGCGGTTTCCCGAGGAGATGATGAGTCTCGGAAATGCGTTGCTATCGTTGGGGCAATGTTTCGGGTTGCTGATGGGGACGTTCATA TTGGGCCAAGTCAAGAAGCGTACTCATTGGGTGAAGGATGATTTGAACCTTGCTCGGTTCGATTACTACTACTGGTTGGTAGCCGGGTTGAGTTTCTCCA ACTTCTGCTACTTCTTGGTATGTAGTTGGGCTTACGGTCATAACTGA
AA sequence Show only first row Show all	>Lus10008539 pacid=23177356 polypeptide=Lus10008539 locus=Lus10008539.g ID=Lus10008539.BGIv1.0 annot-version=v1.0 MSANDTKTANKAPEAEVLIHVDVVRIKGGWRTLPFIIANEILEKVASMGLVPVCIPYLSKEYFLDIGGVSAFVLVSGAAANLTPIFGALASNFYGKFRVI VAGTAITLVGMLILWITSVVHALRPGHVCDDSMHCPRGAKMWRLILLFSSFAIMASGAGGIRPCSPSFGADQIHDPRDPNNLRTIEGYYGWYYSSVAISI MVSVLVMSEIQEHVGWLTLFAIPPALMFLSFTFFMMGSSRYVKVSTKYSDSGSGICRVIIAAWRRRRLPLPQPGDDQARWSYPERSTFVHPTNGLSILNR ACLMTAGEEARNPATCLCTVQEVEELKALISVIPIWSTGIIITVANTPGAFPNYQAQAMDRHIGLLNLTPAAYIIFSVITMTLWLALYNQTIVPLLARLT SNNLPNGIPPRIRMAMGLAMSCIANVVAGFVEHRRRVVPKGTMSGNWLILQFSLMGLAEAFYMLGQLDFFNSRFPEEMMSLGNALLSLGQCFGLLMGTFI LGQVKKRTHWVKDDLNLARFDYYYWLVAGLSFSNFCYFLVCSWAYGHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	2.8	0.9691
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	4.0	0.9691
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	4.0	0.8860
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	4.9	0.9589
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	5.7	0.9543
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	6.3	0.9507
					Lus10011637 [exp]	6.9	0.9494
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	8.0	0.9424
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	8.4	0.9463
AT2G03630			unknown protein		Lus10037082 [exp]	8.5	0.6665

Compare expression of checked genes

Lus10008539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.