Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15730 492 / 2e-173 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT5G54590 398 / 3e-136 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT1G67720 232 / 5e-68 Leucine-rich repeat protein kinase family protein (.1) AT3G19300 228 / 7e-68 Protein kinase superfamily protein (.1) AT4G02010 228 / 2e-67 Protein kinase superfamily protein (.1) AT2G19210 229 / 4e-67 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29990 228 / 1e-66 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G37050 226 / 6e-66 Leucine-rich repeat protein kinase family protein (.1.2.3) AT3G58690 216 / 7e-66 Protein kinase superfamily protein (.1) AT2G23200 224 / 1e-65 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008491 [exp] 809 / 0 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 384 / 6e-131 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 381 / 9e-130 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 241 / 8e-73 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 239 / 6e-72 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10030741 [exp] 223 / 1e-68 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10038174 [exp] 228 / 2e-68 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 233 / 4e-68 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10021003 [exp] 223 / 6e-68 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101400 [exp] 599 / 0 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 598 / 0 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 389 / 3e-133 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 383 / 8e-131 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.006G132100 [exp] 239 / 1e-70 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 239 / 1e-70 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.004G140301 [exp] 234 / 2e-70 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.019G094200 [exp] 230 / 2e-70 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.009G100400 [exp] 233 / 8e-70 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.016G140200 [exp] 237 / 1e-69 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008540 pacid=23177366 polypeptide=Lus10008540 locus=Lus10008540.g ID=Lus10008540.BGIv1.0 annot-version=v1.0 ATGGTTTCTAAAGGGGACTTGATTGTGATCGGAATATCGGTTGGGGTGGCACTTGGAGTGATCATAGCAGTGCTTCTGTTCCTCTTTCTGAGATGGTACA AGAATCGTGTTCATCTCAAGAAATGGGCAGCCAACGAGCAGCAGCAGCGTAGTCCAACGTCGTCGGTCCCTATTCGAGTCAATGGCTTCGATGCGTCCAC TGATTTCAGTGCCTCCATCACCATTCGGGAGACTGAGCTGGCGCACAAGGTTCCTTCCCCGCATTCCTCTTGGTGGAGTCGACCCAGCAAGGATCATTTC GTTTCAATGGCTGGAGTAGTTCGATACTCTTACAAGGATATCCAGAAAGCTACGCAGAATTTCACGACTAGTGTTGGACAGGGTTCGTTTGGTGTGGTGT TTAAGGCTGTCTTGCCTTCTGGCGAGACATATGCTGTGAAAGTACTTGCCTCCAGTTCAAAGCAGGGGGAGAAGGAGTTCCAAACTGAGGTTTGCCTGTT GGGAAGGCTGCATCACCGCAATTTGGTGAATTTGATTGGTTATTGTGTAGATAAGGGCCAGCGTATGTTGATATATGAGTTCATGAGTAATGGGAGCCTG GCAAACCTTCTATACAATAATGACACGAGAATACTAAGTTGGGAAGACAGGCTCCAAATTGCTCTCGATATTTCACATGGTATTGAGTATCTTCATGAAG GGGCAGTACCACCTGTTATACATAGAGACTTGAAGTCTGCTAACATCTTGTTAGACCAATCAATGAGAGCCAAGGTTGCTGATTTTGGTCTGTCGAAGGA AGATGCATTTGATGAACATACCTCTGGTCTCAAGGGCACTTACGGGTACATAGATCCAGTGTACATAGCAACGAATCGGTTCACTACAAAGAGTGACATC TACAGTTTCGGTGTTATCATCTTCGAACTTATAACCGGCATCCATCCCCATCAGAATCTCATGGAATACGTCAATCTAGCGGGAATGAGTTCGGATGGCG TTGATGAAATTGTAGACGAGAAACTGGCGGGGAAATGCGAGATTCAAGATGTGAGAGAGCTAGCTAACATTGGCAAAAAATGCTTGCATAAATTCCAGAG GAAGAGACCGATGATAGGTGAAGTTTCGCAGGTTATATTGAAGATAAGGCAACGGCACCTTGTGAAGCAAGACACCATGTCTACTCAAGCAAGTTTCTCA CGGGTGCTAAGCAGGATACAGAGTCAGCATATAGAATTGAGTAGGATAACCAGCTTCCAAGATGGTGATTCATAA
AA sequence Show only first row Show all	>Lus10008540 pacid=23177366 polypeptide=Lus10008540 locus=Lus10008540.g ID=Lus10008540.BGIv1.0 annot-version=v1.0 MVSKGDLIVIGISVGVALGVIIAVLLFLFLRWYKNRVHLKKWAANEQQQRSPTSSVPIRVNGFDASTDFSASITIRETELAHKVPSPHSSWWSRPSKDHF VSMAGVVRYSYKDIQKATQNFTTSVGQGSFGVVFKAVLPSGETYAVKVLASSSKQGEKEFQTEVCLLGRLHHRNLVNLIGYCVDKGQRMLIYEFMSNGSL ANLLYNNDTRILSWEDRLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVADFGLSKEDAFDEHTSGLKGTYGYIDPVYIATNRFTTKSDI YSFGVIIFELITGIHPHQNLMEYVNLAGMSSDGVDEIVDEKLAGKCEIQDVRELANIGKKCLHKFQRKRPMIGEVSQVILKIRQRHLVKQDTMSTQASFS RVLSRIQSQHIELSRITSFQDGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	1.0	0.9363
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	1.4	0.9327
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10028284 [exp]	3.0	0.9286
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011084 [exp]	5.2	0.9057
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	5.4	0.8941
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	5.7	0.9202
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	7.7	0.9043
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019327 [exp]	8.1	0.8804
AT1G56423			unknown protein		Lus10020695 [exp]	9.6	0.8877
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	9.9	0.9113

Compare expression of checked genes

Lus10008540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.