Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 778 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 720 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 676 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 672 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 669 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 658 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 652 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 630 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 611 / 0 protein kinase family protein (.1) AT1G17540 451 / 2e-148 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021596 [exp] 944 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 913 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 837 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 764 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 731 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 665 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 650 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 622 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 579 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 761 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 756 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 698 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 663 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 663 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 649 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 635 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 598 / 0 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 473 / 3e-158 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 402 / 3e-128 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10008542 pacid=23160983 polypeptide=Lus10008542 locus=Lus10008542.g ID=Lus10008542.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGATTGGAGGAATCAAGGAGTACCAACAAGTGGTGGTGGCGGTAGATAGAGACAAGGGAAGCCAGCATGCTCTGAAATGGGCAACTGATC ATCTCCTCACCAAAGGCCAAACCGTTGTTCTCCTTCACGTCAAGCATCGTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCCTCTGTTTCAATGGT TGATGATGATAATAACTCAGAAATAAATCAAGCGCATGCCAAAGAACTATTGCTTCCCTTCCGTTGCTTCTGCAGCCGCAAAGATTTTAAATGCAGTGAA GTTGTAGTCGAGGATTATGACATCGGCAAGGCAATCGTGGACTACGTGCATGCAAATTCCATCGATGCTTTGGTGTTGGGTTCTCCATCCAAAAGTGGCC TTGTCAGGAAGTTCAGGGTGTCGGATGTTCCAGCCAATGTGGCCAAATTGGCACCAGATTTTTGCACTGTTTACATCATTGGTAAAGGGAAGGTATCTTC CATAAAATCTGCGACTGCTTCGGTGCCTGCTAAACCTGTAGCCGCCATCCAAAGTTTCATGCCAGTGCCAGTCTCTGCATCATCGAGATCATCGTCCCCA TGCCGAAATTTCTCAAATCTCGAACCTTCTTCTACACCGCACCACAGAGGTTTTTGCTTTCCTTACCTGCAGCCCATCACTTCTTCTACTTCCTGCCTCA CATCGCCGTTTACCAGAGGAAGGGCTTCAATAGCCAAACTAGTTGAATATGCAATGCCAGATTCAGACATTTCCTTCGTCAGCAGCGGGAGGCCAAGCAT TGATTACGATTTCTCATCTTTAAACGATAGTGATCCTGGACGTGTCTCGGATTTCGAAGATGTCCGAAACAGTTCTGCATCCTATAACTCACCTGACTTC ACTTCATCCCAGACTTTATCAACCAGTAGCTCCCAAGAAAGTTGCAGACTTTCAAATGGTGGCCAGAATTTTGAACGAGAAGACATGGAAGCTGAGATGA TGAGGTTGAGACAAGAGCTTAAGCAAACAATGGAAATGTATAGTTCAGCCTGCAAAGAAGCTCTCACAGCTAAACAACAAGCTAGAGAGCTTCATAGGTG GAGAATGGAGGAAGAGCAAAGGTTGGAAGAGGCAAGATTGTCCGAAGAGGCTGCATTGGCTCTCGTCGAGAAGGAGAAAGCCAAATGCAAAGCAGCCCTC GAGGCAGCTGAAGCAGCCGCAAAGATAGCCCAATTCGAAGCTCAGAAAAGGAAAGCCGCAGAGCAGAGAGCCATACAAGATGCAGAGGAAAGAAAGAAAA ACGAAGCAGCGGGATCATCTTTATCCCGTAACGATATCCGTTACAGGAGATACGACATTGAAGAGATTGAATCAGCAACCAAGGAATTCGCAAACAACTT GAAGATTGGAGAAGGCGGGTATGGACCGGTTTACAAGGCGCGTCTAGACCACACCCCGGTCGCAATAAAAGTATTGCGGCCGGATGCGGCTCAAGGGCGG TCGCAATTTCAACAGGAAGTTGAAGTCCTGTCCTGCATCCGACATCCCAACATGGTTCTCCTTCTCGGAGCTTGCCCCGAATACGGATGCTTGGTATACG AGTACATGGCGAATGGAAGCCTGGAAGATAGACTTTTTAGAAAAGGGAACACTCCAACCCTTTCGTGGCAACTTAGATTCCGCATTGCTGCAGAAATAGC CACGGGACTACTTTTCCTCCACCAAACCAAGCCTGACCCGCTAGTCCATCGCGATCTAAAGCCCGGGAACATCTTGCTAGACCGAAACTTCGTCAGCAAG ATCAGTGACGTCGGGCTAGCAAGACTTGTGCCCCCATCAGTTGCGGACTCGGTTACACAATATCGGTTAACATCGACGGCAGGAACTTTTTGTTACATCG ATCCGGAATATCAGCAGACTGGAATGCTCGGGGTGAAGTCCGATGTCTACTCCTTAGGTATTATGCTGCTTCAAGTAATAACTGCCAAGCCACCTATGGG GCTAACGCACCACGTACAAAGATCAATAGAGAATGGCAGTTTTGCCAATATTCTCGATCCAAACGTTGACGACTGGCCTGTCGATGAGGCCTTAAAGTTT GCGAATCTGGCACTTCAATGTGCCGAACTAAGAAAAAGAGATAGACCGGATCTCGGAAAAGTCATATTGCCAGAGCTTAACAAGCTTAGGGAACTGGCTG ATCAGAATTCTCCAGGGAGCTCATCACCACGCAACAGCCCAGCAAGACAGGATGTGTTAAGTGATGTCCAGTCTGGGTACAATAGCTCAAGAACACCATC CAGCTCCTCTTCATATGGTGGAAGAAAATAA
AA sequence Show only first row Show all	>Lus10008542 pacid=23160983 polypeptide=Lus10008542 locus=Lus10008542.g ID=Lus10008542.BGIv1.0 annot-version=v1.0 MSKKIGGIKEYQQVVVAVDRDKGSQHALKWATDHLLTKGQTVVLLHVKHRPSSSSSSSSSYSSVSMVDDDNNSEINQAHAKELLLPFRCFCSRKDFKCSE VVVEDYDIGKAIVDYVHANSIDALVLGSPSKSGLVRKFRVSDVPANVAKLAPDFCTVYIIGKGKVSSIKSATASVPAKPVAAIQSFMPVPVSASSRSSSP CRNFSNLEPSSTPHHRGFCFPYLQPITSSTSCLTSPFTRGRASIAKLVEYAMPDSDISFVSSGRPSIDYDFSSLNDSDPGRVSDFEDVRNSSASYNSPDF TSSQTLSTSSSQESCRLSNGGQNFEREDMEAEMMRLRQELKQTMEMYSSACKEALTAKQQARELHRWRMEEEQRLEEARLSEEAALALVEKEKAKCKAAL EAAEAAAKIAQFEAQKRKAAEQRAIQDAEERKKNEAAGSSLSRNDIRYRRYDIEEIESATKEFANNLKIGEGGYGPVYKARLDHTPVAIKVLRPDAAQGR SQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRKGNTPTLSWQLRFRIAAEIATGLLFLHQTKPDPLVHRDLKPGNILLDRNFVSK ISDVGLARLVPPSVADSVTQYRLTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQVITAKPPMGLTHHVQRSIENGSFANILDPNVDDWPVDEALKF ANLALQCAELRKRDRPDLGKVILPELNKLRELADQNSPGSSSPRNSPARQDVLSDVQSGYNSSRTPSSSSSYGGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10008542 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	8.0	1.0000
					Lus10003536 [exp]	11.0	1.0000
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	11.8	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	13.9	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	14.0	1.0000
AT4G27790			Calcium-binding EF hand family...		Lus10005911 [exp]	14.5	1.0000
					Lus10009727 [exp]	15.0	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	21.6	1.0000
					Lus10011078 [exp]	22.6	1.0000
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	22.9	1.0000

Compare expression of checked genes

Lus10008542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.