Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 871 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 833 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 711 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 677 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 665 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 664 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 640 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 590 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15340 584 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT5G36150 580 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014538 [exp] 851 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10032146 [exp] 848 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 720 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 646 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 643 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 630 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 613 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016439 [exp] 493 / 6e-167 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 486 / 6e-164 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079200 [exp] 901 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079300 [exp] 860 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 845 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 823 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002500 [exp] 705 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.014G002400 [exp] 702 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.004G132500 [exp] 681 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 666 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 662 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 660 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10008544 pacid=23160991 polypeptide=Lus10008544 locus=Lus10008544.g ID=Lus10008544.BGIv1.0 annot-version=v1.0 ATGTGGAGATTGAAGCTATCAGAAGGGGATGTTGATGAAGAAGTGAAATCTTGCAACAATCATGTGGGAAGGCAGTATTGGGAGTTTGATCCACATCAAC ATGATCTACCAGACAAGAGTAGAGCTCGAATTGATGAGGCTCGACTTCATTTCACAAGCAACAGGTTCCACACCAAGCACAGTTCCGATCTTCTCATGAG ACTCCAGTTTGCAAATGCAAGAAGGGATCATATTGATCAGGGTAGTGGCGATGCAAAGTTGGAAATGATGAATAATGAAGAAGAAAGAGTGAAGATGGTG GTGAAAAGGGGTTTGAGGTTCTACTCAACTTTACAACACCACTCCGGGTTCTGGCCTGGTGATTATGGCGGTCCTCTATTCCTCCTTCCTTCCTTGGTAA TCAGCTTGTATGTAAGTGGTGCCCTGCATTCAATTTTAAGTGAACATCATCAACTTGAGATTCGCCGGTATCTCTACAACCATCAGAATGAAGATGGAGG GTGGGGATTGCATATAGAAGGGAGCAGCATAATGTTTTGCACCGTGCTGATCTACGTGACGTTGAGATTGATGGGCGAGGAAATGGACGGCGGGGATGAT GGAGCCATGGAGAAAGCCAGAAGCTGGATTCTCACTCGTGGAGGAGCAACTTTCATTCCCTCTTGGGGCAAATTGTGGCTTTCCGTTGTTGGAGTGTATG AATGGAGTGGGGTTAATCCATTGCCTCCGGAGCTTTGGCTCTTCCCTTATTCTCTCCCGATACATCCAGGAAGAATGTGGTGCCATATTAGGGTGGTATA TCTGCCAATGTCGTATTTGTATGGGAAAAAGTTTGTGGGAAGAGTGAACTCATTGATACTAAGTTTGCGGAGGGAGCTGTACGTTGTTCCTTATCACGCC ATTAACTGGAACCTTACCAGAAATCTTTGTGCCAAGGAGGATTTGTACTACCCACATCCGTATATCCAAGACATGTTGTGGGCTACTCTTCATAAAGTGT GGGAGCCTCTAATGGCTAAATGGCCTTTCTCTAAGCTCAGGGAGCGTGCCATCCTAACCGTTATGCAACACATTCATTACGAGGACCAGTCCACTAATTA CATTTGTCTAAGTCCAGTCAACAAGGGGTACAATGGGTCTCAGTGTTGGGATGTAAGTTTTGCGGTACAAGCAATTATTGCTACAAATAATATTGAAGAA GGCTACTGTGTTTCAATGCTTAAGAAAGCACACAACTTCATCAAAACCTCCCAGGCTGCAGTATTGCTGTCCCAAATGCCGAAAGGTACTGTGGGAGAAC CGGTTCCACTCAATCAACTACTCGACGCTGTTAATTGCGTTCTGTCTTTGCAGAATGAAAATGGAGGGTTTGCTTCATATGAGCTGACCAGATCTCACCA ATGGTTAGAGATGCTGAATCCTTGTGAGACGTTTGGAGACATAATGATCGATTACCAGTACGTGGAATGCACATCATCGGCGATCCAAGGATTGAAATGG TTCACAAAGGCACATCCACTGCACAGAAAGAAAGAGATACAAGCATGCATCGCCAAAGCAGTCAAGTTCATCGAATCCATACAACGCCCAGATGGGTCGT GGTACGGTTCGTGGGGAGTTTGCTTCAGTTACGGGACATGGTATGGGATAATGGGGCTGGTCAGTGGAGGCAAGACGTACCAGAATTGCACATGTATAAG AAAAGCATGTGATTTCTTGCTGTCCAATCAACTCCCCTCTGGAGGCTGGGGAGAGTCGTACCTTTCTTCTCAGTACAAGACTTACACCAACTTGGATGGT GGCAAGTCTCATAATGTCAACACTTCTTGGGCATTGCTCGGCCTTATTGAAGCGGGCCAGGCGCAACGGGATCCAGCTCCATTGCATCGAGCTGCAAAGG TGCTGGTTGATTCTGTAATGGAGGATGGTGACTTCCCACAACAGGAAATCATTGGAGTATTCAACAGGAATTGCATGATCAGTTATTCGGCCTACAGAAA CATATTCCCAATTTGGGCCCTGGGAGACTATCTCAATCGAGTATTGTTGTTGCATCGTTAA
AA sequence Show only first row Show all	>Lus10008544 pacid=23160991 polypeptide=Lus10008544 locus=Lus10008544.g ID=Lus10008544.BGIv1.0 annot-version=v1.0 MWRLKLSEGDVDEEVKSCNNHVGRQYWEFDPHQHDLPDKSRARIDEARLHFTSNRFHTKHSSDLLMRLQFANARRDHIDQGSGDAKLEMMNNEEERVKMV VKRGLRFYSTLQHHSGFWPGDYGGPLFLLPSLVISLYVSGALHSILSEHHQLEIRRYLYNHQNEDGGWGLHIEGSSIMFCTVLIYVTLRLMGEEMDGGDD GAMEKARSWILTRGGATFIPSWGKLWLSVVGVYEWSGVNPLPPELWLFPYSLPIHPGRMWCHIRVVYLPMSYLYGKKFVGRVNSLILSLRRELYVVPYHA INWNLTRNLCAKEDLYYPHPYIQDMLWATLHKVWEPLMAKWPFSKLRERAILTVMQHIHYEDQSTNYICLSPVNKGYNGSQCWDVSFAVQAIIATNNIEE GYCVSMLKKAHNFIKTSQAAVLLSQMPKGTVGEPVPLNQLLDAVNCVLSLQNENGGFASYELTRSHQWLEMLNPCETFGDIMIDYQYVECTSSAIQGLKW FTKAHPLHRKKEIQACIAKAVKFIESIQRPDGSWYGSWGVCFSYGTWYGIMGLVSGGKTYQNCTCIRKACDFLLSNQLPSGGWGESYLSSQYKTYTNLDG GKSHNVNTSWALLGLIEAGQAQRDPAPLHRAAKVLVDSVMEDGDFPQQEIIGVFNRNCMISYSAYRNIFPIWALGDYLNRVLLLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	2.2	0.8433
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	4.9	0.8202
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	5.1	0.7822
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	7.2	0.8061
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	10.5	0.8053
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	11.0	0.7713
AT5G52950			unknown protein		Lus10027565 [exp]	13.4	0.8026
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	14.1	0.7899
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	14.9	0.8081
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	17.0	0.7959

Compare expression of checked genes

Lus10008544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.