Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07170 523 / 3e-175 ARM repeat superfamily protein (.1) AT4G27060 172 / 1e-44 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 139 / 5e-34 ARM repeat superfamily protein (.1) AT1G27210 137 / 2e-33 ARM repeat superfamily protein (.1) AT5G62580 119 / 1e-27 ARM repeat superfamily protein (.1) AT1G59850 97 / 1e-20 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027590 [exp] 1348 / 0 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10011149 [exp] 150 / 2e-37 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 141 / 3e-34 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 132 / 3e-31 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10033129 [exp] 116 / 9e-27 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10010730 [exp] 111 / 4e-25 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036647 [exp] 104 / 6e-23 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10036675 [exp] 99 / 1e-21 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10019616 [exp] 66 / 2e-11 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079500 [exp] 838 / 0 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 144 / 2e-35 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 139 / 2e-34 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 137 / 1e-33 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 128 / 3e-30 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 87 / 2e-17 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 84 / 1e-16 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008545 pacid=23160987 polypeptide=Lus10008545 locus=Lus10008545.g ID=Lus10008545.BGIv1.0 annot-version=v1.0 ATGAGGGCGCAACCGCTGTCAAAGGCTAGAGGATCTTCGAGGGTCAACGCTCAGCAGTCTAATTTTGAGCTAAAACACAAAGTGGTGCTGGCACTCAACA AACTTGCCGATCGGGATACTTGTCACATAGGTGCGGATGAGCTTGAGAAAGTGGCTGAATCTCTAACCCCAGATGGGATTACCCCGTTCTTGTCTTGTAT ATTGGACACTGATAAGGAGCAAAAGAGTGCTGTAAGGAAGGAATGTGTTAGATTGATGGGTATGATGCCTCTTTTTGAAGCTCTGGGTGAACAGAATAAA CATGTGCAGTCAGGTTCAGCATTATGCTTAGCCAAAGTCATTGACAATACCCAGGATCCTCCAACTCCCATTCTGCAGAGAATGTTGTCTCGGATTACAA AGTTGTTAAAGAATCCTCACTTCATGGCTAAACCAGCAGTTATAGAACTGACTAGAAGTATTCTTCAGGCAGGTGGTGCTCCATCACAAAATATTCTAGC TGCTGCGATGACTAGCATTCAAGACGCCCTGAAGAACAGTGACTGGAGTACACGCAAGGCCGCATCTGTGGCGTTGGGAGAACTTGCTGCTGCTGGGGGA TCCTGCTTGGGATCTTTCAAAGCGTCCTGCATTCGATCCCTTGAATCATGCCGTTTTGATAAAGTGAAACCCGTTAGAGACGCGATAAATCAAGCCATAC AGTACTGGAAAATTCTTCCGGGGTCTGATGCTCACGAGCCTTCTGATGTGGGATCCTCTATAAAAGAAAATTACTGTGGAGGTGACTACAGTGATAACAC GAGTACTAGTGGCTCTGCAAAGAAAGGTGCAATACTAAACAAAGTTATTACAGACTCGACTAAAAGAAGGATTTCTTCATCCGTAAAGAGAGCATGCCAA CCTTACACAGACTCTCCAAAATCTAAAGCAGATGATTGGCATATTGAAATTGCCGTCCCGAAGCATCAGGATTTGTCACGACAAGACCACCAGAATGAGG AATCCCAGGGCAGTAGTTGTATTACTAGGACAGTAGAGAGGATGAGTGTTGACGTGTCAAGTCCTCCTGATATTAGCTGTGAATATGTGTCAATGGATGA CAAAGAGGACTGTTTCTCTGCGTCCACCCTTGTTGCTGACAACTTCAACTCCAAAAGAGTTACCCATCATGACTCGCATAAGAATGGTGATTTGTTGCTA TTGAGGGGGAGAAGCCAGTATGTTGCAGCTGGAGAGACGAATACTGACGACGTATATTGTGTAAATGTTCATGATCGTAGAAGTCTTGATTCAACAGTTA CTGAAACTAGCTTCCAACCTTCATGCGGATGTTGCTCGCATGTAGCGGGTGAAGTGGCCTCAATTAGGAAACAACTTTCTGAGATAGAGAATAAACAAGC AAACTTAATGGAAGTGCTACAGGAGTTCTCAGCTGGGATAACGTCTAGCATGTCTCTTCTGAAGTCTAAAGTATCAGGTTTCGAGCATGAAATAGATAGA ATATCTAGCTTTCTAGTACAAGGAGCCAGACATTCGGAATCAGCCGTTTCTAGGATTATGAAGCAGAACCAAAATGTTGGATGTACACCTAGGCCCTCCA TTGATATTGACAATAGGCAACCGTCACATTTTACCACAAAACACTCAGACATTTGGGATGGTAGTAGAAGTAAATCGACAAAGTCAGTGAAACAAGTCAA GGAGATTAGTCCCGATCTTACTGCAGTTTCGACCAGGAATGTTACAGTGAAGGGGATGCTAAAATGCTCAAGTAGAGGGTCACAAAGCAACAGGAAAGTT GTTGCTGATCTTGCTTCAGTTGCAAATGTGAGTAGCAGGCAAAGTGGGACGGAGAATAAGCACTTAGATTGGCAACGCGTTAAAGCTTTCATGTCTGAAG GAGATTTGGACTCTGCTTACGCAGAAGCTCTCTGTTCTGGCAATGAACTTATTTTTCTTGAGCTTCTCAATAGAACTGGTCCTGTTCTGGAATGCCTTTC CCGGGAGACCATGGGTGAAGTTCTTACAACTTTGGTTGTGGAATTGAGCTCGATCCATGGAGCAGATTACCTTGGTCTCTCTGCGAAAGGCAGAAGAGAG TTGTTGTCGGCCGCCGAGGAGGCTGTAGGTGCTGGATTTTCGAATCCGGCTGAAAGAAAATCTATGACCCAACTTACAGCTAGGTTGCATCAACTGTGGG GTAAGTAA
AA sequence Show only first row Show all	>Lus10008545 pacid=23160987 polypeptide=Lus10008545 locus=Lus10008545.g ID=Lus10008545.BGIv1.0 annot-version=v1.0 MRAQPLSKARGSSRVNAQQSNFELKHKVVLALNKLADRDTCHIGADELEKVAESLTPDGITPFLSCILDTDKEQKSAVRKECVRLMGMMPLFEALGEQNK HVQSGSALCLAKVIDNTQDPPTPILQRMLSRITKLLKNPHFMAKPAVIELTRSILQAGGAPSQNILAAAMTSIQDALKNSDWSTRKAASVALGELAAAGG SCLGSFKASCIRSLESCRFDKVKPVRDAINQAIQYWKILPGSDAHEPSDVGSSIKENYCGGDYSDNTSTSGSAKKGAILNKVITDSTKRRISSSVKRACQ PYTDSPKSKADDWHIEIAVPKHQDLSRQDHQNEESQGSSCITRTVERMSVDVSSPPDISCEYVSMDDKEDCFSASTLVADNFNSKRVTHHDSHKNGDLLL LRGRSQYVAAGETNTDDVYCVNVHDRRSLDSTVTETSFQPSCGCCSHVAGEVASIRKQLSEIENKQANLMEVLQEFSAGITSSMSLLKSKVSGFEHEIDR ISSFLVQGARHSESAVSRIMKQNQNVGCTPRPSIDIDNRQPSHFTTKHSDIWDGSRSKSTKSVKQVKEISPDLTAVSTRNVTVKGMLKCSSRGSQSNRKV VADLASVANVSSRQSGTENKHLDWQRVKAFMSEGDLDSAYAEALCSGNELIFLELLNRTGPVLECLSRETMGEVLTTLVVELSSIHGADYLGLSAKGRRE LLSAAEEAVGAGFSNPAERKSMTQLTARLHQLWGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	0	1
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	2.0	0.9610
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	3.2	0.9604
AT4G31880			unknown protein		Lus10018332 [exp]	4.5	0.9485
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	4.7	0.9484
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	6.3	0.9517
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	6.7	0.9583
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	7.7	0.9504
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	8.1	0.9483
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	10.7	0.9515
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	11.5	0.9483

Compare expression of checked genes

Lus10008545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.