Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07180 499 / 2e-176 Protein kinase superfamily protein (.1.2) AT5G01020 399 / 1e-137 Protein kinase superfamily protein (.1) AT3G01300 375 / 4e-127 Protein kinase superfamily protein (.1) AT2G28930 368 / 2e-125 APK1B protein kinase 1B (.1.2.3) AT5G15080 370 / 3e-125 Protein kinase superfamily protein (.1) AT3G28690 365 / 1e-124 Protein kinase superfamily protein (.1.2.3) AT1G07570 365 / 3e-124 APK1A Protein kinase superfamily protein (.1.2.3) AT2G05940 367 / 4e-124 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G02290 360 / 1e-122 NAK Protein kinase superfamily protein (.1.2) AT5G56460 360 / 3e-122 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027589 [exp] 669 / 0 AT2G07180 545 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040588 [exp] 528 / 0 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 394 / 1e-134 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 377 / 6e-129 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 374 / 6e-128 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 372 / 2e-127 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 374 / 1e-126 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 373 / 4e-126 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 371 / 4e-125 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149100 [exp] 521 / 0 AT2G07180 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G079600 [exp] 513 / 0 AT2G07180 539 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G113600 [exp] 403 / 4e-139 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 403 / 7e-139 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 380 / 8e-130 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 380 / 3e-129 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 380 / 3e-129 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 372 / 5e-127 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.010G203400 [exp] 372 / 9e-127 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.001G002300 [exp] 370 / 9e-127 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008546 pacid=23160988 polypeptide=Lus10008546 locus=Lus10008546.g ID=Lus10008546.BGIv1.0 annot-version=v1.0 ATGAGTGTTTGTTTCAGTATGGATAAGAAACATCACCAACTTCCCAGGGAGCGTCGTCATCACTATAAGGGAAGTGATTCCTTGAGGTCTTCAGCTGCAC TAAACACGAAAGGAAGCTCCTCCTTTGACAGTCAAAGTATAATAAGCACACCCCCTAAGGTTGCTAGGAACGTTTTGGATCTTCGAAACAATCCTGCTGG ATATAGCAATGTTAGTACCTTCACGTACGATGAAATGAAACTCGCCACCCACAACTTTAGGCCCGATTTGATTCTAGGAGAGGGTGGATTTGGAGTTGTT TATAAAGGTGTCATAGATGAGACTGTAAGGCCTGGCTATTCGCCCTCTAGTACAGTTGCAATCAAGGAGCTTAATCCTGATGGCTTGCAAGGAGACCGTG AATGGCTGGCAGAAGTCAATTATTTAGGTAAACTCAGTCATTCTAACCTTGTAAAGCTTATCGGCTACTGCTGTGAAGATGATCACAGGCTTTTGGTGTA TGAGTACATGGCAAGTGGCAGCCTCGAAAGGCATCTTTTTCGACGGGTTGGGTGTACATTGACATGGTCAAAACGAATTAAGGTTGCTCTAGATGCTGCA AAAGGACTTGCTTTTCTTCATGATGAAGAGAGACCTGTCATATATCGCGATTTCAAGACATCCAATGTACTACTAGATGGGGAGTTCAATGCAAAGCTTT CTGATTTTGGGCTTGCAAAAGATGGACCCATGGGAGACCAAACTCATGTCTCAACACGGGTAATGGGGACCTATGGCTATGCCGCTCCCGAGTATGTAAT GACTGGTCATTTGACAGCTAGAAGTGATGTTTATGGGTATGGAGTAGTGCTGTTAGAGTTGCTTCTTGGAAGGGAAGCACTAGACAAGAGCAAGGCCGGA AGAGAACACAACTTAGTTGAGTGGGCGCGGCCACTATTGATCCATAACGACAAGGTTTTGAGAATCTTAGACCCTAGAATTGACGGTCAGTATTCAGCTC CAACAGCAATCAAAGTTGCGCATTTAGCATACCAATGCCTCAGCCAAAACCCCAAGGAGAGACCATTGATGAGCGAGGTGGTACAACTACTGGAGACTGT AAAATCCAAGGACATGGATGATGATAACGATGATGATCATGTGTTTGATCCAAAGCATCCCAGACATGGAAGAAGGAGAAGAGAAAGACAAGTATGA
AA sequence Show only first row Show all	>Lus10008546 pacid=23160988 polypeptide=Lus10008546 locus=Lus10008546.g ID=Lus10008546.BGIv1.0 annot-version=v1.0 MSVCFSMDKKHHQLPRERRHHYKGSDSLRSSAALNTKGSSSFDSQSIISTPPKVARNVLDLRNNPAGYSNVSTFTYDEMKLATHNFRPDLILGEGGFGVV YKGVIDETVRPGYSPSSTVAIKELNPDGLQGDREWLAEVNYLGKLSHSNLVKLIGYCCEDDHRLLVYEYMASGSLERHLFRRVGCTLTWSKRIKVALDAA KGLAFLHDEERPVIYRDFKTSNVLLDGEFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGYGVVLLELLLGREALDKSKAG REHNLVEWARPLLIHNDKVLRILDPRIDGQYSAPTAIKVAHLAYQCLSQNPKERPLMSEVVQLLETVKSKDMDDDNDDDHVFDPKHPRHGRRRRERQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	1.7	0.7798
					Lus10027052 [exp]	4.7	0.6895
					Lus10003555 [exp]	5.5	0.6101
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10005541 [exp]	8.8	0.5804
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	15.7	0.6605
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	17.2	0.6608
					Lus10002396 [exp]	24.0	0.5843
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	25.1	0.5531
					Lus10005225 [exp]	31.4	0.5275
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	43.8	0.4484

Compare expression of checked genes

Lus10008546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.