Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035197 [exp] 145 / 6e-44 ND / Lus10032027 [exp] 145 / 8e-44 ND / Lus10034546 [exp] 120 / 4e-34 AT3G22060 43 / 1e-05 Receptor-like protein kinase-related family protein (.1) Lus10013255 [exp] 105 / 3e-28 ND / Lus10013254 [exp] 99 / 6e-26 ND / Lus10030780 [exp] 99 / 7e-26 ND 36 / 0.004 Lus10034545 [exp] 98 / 2e-25 ND / Lus10013256 [exp] 90 / 9e-22 AT3G21970 39 / 8e-04 Domain of unknown function (DUF26) (.1) Lus10030781 [exp] 84 / 6e-20 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008547 pacid=23160985 polypeptide=Lus10008547 locus=Lus10008547.g ID=Lus10008547.BGIv1.0 annot-version=v1.0 ATGTCAGATGGGAATGCAAGCTCAAGAAATGAAACGGCCAATGCCCCCGCCGCGAAGTCAACTCCGCCAACGTCCAAGTTCCGCCAGGTGATCAATCTAA ACCTCCTTTTTTCCGATGCTCTTTCTGTTTGTCTGATATACATACTTATCACTTCCAACGATCGGCGGCATAAAATTTGCAGTGATCTCAAGGGGATCAT GTTGGCGCCGGACCAAATCGGAACGAAGAACTTGAAAGACGTCCAGAAGATGGAGGAGACCGTCTCCAGGAAAACCTTTGTTAAGGAGCTCCAGAAGAAC TCAAACGAGAATGTTGTTGCTGAGTTGGAACCAGAGGATGCTATGGTCACAAACCAGGACAACTTTGGCTTCATGAATATCAAACTCATCATCATGAGCT TCATGGCAATTATAACGCTGCTGCTGCTGCTTATATCGGTTACAGTGTCAGCGCAATCTTCTTGCGGCTCGATGAAGCCGGTAGCAGTTGCGGCATGTAA AGACGACTACACTAATTGTGTAGCCAACGTGATCACGGAGTTAAGGGACATGACACCCTACACTCAACATCAGACGTTCCATTCGGCATACCCACTTAAC GGACCCTCTGGCGCCGTTGTGGGTAAAGCGGCTTGCATAGATGGATCTAGTTTCGTTGACTGTCAGAGCTCCCTTTCCGCTAAAGACTGGCTCAAGCATC ATTGCACTTCTTCTGCCAGAGCCGACAGAATTTGTTTCATGGGATACGGCCAACTATTGTTCCCAAAGATAACTAAGTCAAATAAGTTATAG
AA sequence Show only first row Show all	>Lus10008547 pacid=23160985 polypeptide=Lus10008547 locus=Lus10008547.g ID=Lus10008547.BGIv1.0 annot-version=v1.0 MSDGNASSRNETANAPAAKSTPPTSKFRQVINLNLLFSDALSVCLIYILITSNDRRHKICSDLKGIMLAPDQIGTKNLKDVQKMEETVSRKTFVKELQKN SNENVVAELEPEDAMVTNQDNFGFMNIKLIIMSFMAIITLLLLLISVTVSAQSSCGSMKPVAVAACKDDYTNCVANVITELRDMTPYTQHQTFHSAYPLN GPSGAVVGKAACIDGSSFVDCQSSLSAKDWLKHHCTSSARADRICFMGYGQLLFPKITKSNKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008547 [exp]	0	1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	3.5	0.8467
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	4.8	0.8558
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018589 [exp]	8.5	0.7877
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	9.6	0.8098
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	13.0	0.7735
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	13.0	0.7972
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	18.0	0.7647
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	41.4	0.8060
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	44.7	0.7704
AT3G26380			Melibiase family protein (.1)		Lus10006226 [exp]	45.2	0.7586

Compare expression of checked genes

Lus10008547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.