Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07360 1607 / 0 SH3 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027588 [exp] 975 / 0 AT2G07360 926 / 0.0 SH3 domain-containing protein (.1.2) Lus10027587 [exp] 946 / 0 AT2G07360 956 / 0.0 SH3 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149400 [exp] 1702 / 0 AT2G07360 1806 / 0.0 SH3 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10008548 pacid=23161013 polypeptide=Lus10008548 locus=Lus10008548.g ID=Lus10008548.BGIv1.0 annot-version=v1.0 ATGGCGGATTCTTCTGGAACTACTTTGATGGATCTCATAACGGCGGACCCGGGACCGAAATCTGCTGCGTCTGGATCCACTGCCAGCGCAGCAGCTCCGT CGGCTGTTACTGCTTCGCAGCTGCCGCAGTTGCCGCCGGTACCAATGTCAGCAGCGTCGACGCACTCGTCGGGGAAGTCGAGTTTGGGGGAGAAGAAATC TAAAAGGGCGACGCTTATGCAGATCCAAAACGAAACCATTTCTGCGGCTAAGGCCGCTTTGCATCCCATGAAAACCAATATCATGCCCCAGAAACAAAAG AAAAAGCCAGTTTCTTATTCACAACTTGCACGGAGCATCCATGAACTAGCTGCTACATCTGATCAGAAAAGCTCTCAGAAGCAATTGGTGCATCATGTGT TCCCCAAACTTGCTGTGTACAATTCAGTTGATCCATCTCTTGCACCATCTCTTCTTATGCTAAATCAGCAGTGTGAAGATCGAACTGTGTTACGCTATGT TTACTACTACCTGGCTAGAATTTTATCAGACAACGGTACTCAAGGGTTGAGCTCTGGTGGTGGAATACCTACTCCTAACTGGGATGCCCTGGCAGATATT GATGCTGTTGGTGGCGTGACCCGGGCTGATGTTGTTCCCCGAATAATTGAACAGCTTTCTGCTGAGGCTTCAAATGCTGACACTGAATTTCACGCACGGA GGTTGCAAGCTTTGAAAGCTCTTACATATGCTCCTGCAAACAACTCAGATATATTGGCGAGATTGTATGAAATCGTGTTTGGAATTCTTGATAAGTCCAT CGTCCGAGGTAATTTGCAATATGCTTCCTTGAGTGCACTCAGAAGACTTCCTCTGGATCCTGGAAACCCAGTCTTTTTGCATCGTGCTGTTCAGGGGGTT TCATTTACAGATCCCGTTGCTGTGAGACATGCTTTGGAGATTATCTCAGAGATAGCTATGAAGGATCCTTATGGAGTGGCAATGGCTTTGGGAAAGCTTG CACTTCCAGGAGGGGCTCTACAGGATGTTCTCCATTTGCACGATGTTCTTGCTAGAGTTGCATTGGCTAGGTTGTGCCATACTATTTCGAGAGCTCGTGC ACTGGATGAGAGGCCAGACATTAAATCACAATTTAACTCAGTACTTTATCAACTCCTCCTGGATCCGAGTGAACGAGTATGCTTTGAGGCTGTCTTGTGT ATATTAGGAAAGCATGATAATGCAGAAAGGTATGTTCTTGTGCTGATTGTATGCTATTCTTTAAACGTTTTTCATGAAATTCTTGTGGTGGTGAAGATAA ACGTCTCTACTTCTCTTATCGGTTATGATGATGAGGCTGGTTCACATGTCTGTGTCACTTTTTCAAGTGTTGTAACCACTTCTCCATTATCTTGTTACTA CAGGACGGAAGAACGGGCTGCTGGCTGGTATCGGCTAACCAGAGAGATGTTGAAGTTGCCAGAAGCATCAAATGATTCAAAGTCTTCAAAAGAAAAATCT CAAAAGACTAGGCGCCCCCAACCTTTAATTAAACTTGTTATGAGAAGATTGGAAAGCTCATTTCGGAGCTTCTCTAGGCCTGTTCTTCATGCTGCAGCAA GGGTTGTACAGGAGATGGGAAGAAGTCGAGCTGCTGCATTTTCTGTCGGCTTGACTGATATTGATGAAGGAGTTAACATCAATGAGTTCTCTGATAATGC AGAGCTTGACGAGAATGAAAATCCATATGCAGATGGTGCCCGAAAGGCTTCTTCTTTATCGAGTTCAACTGGTAGCAAGGAAACAATTGCAAGTTTATTA GCATCACTGATGGAGGTTGTTCGAACAACTGTTGCCTGTGAATGTGTTTATGTTCGAGCAATGGTGATCAAAGCATTGATATGGATGCAACTTCCATATG AATCATTGGATGAGCTGGAATCAATCATTGTTTCGGAGCTTTCTGATCCAGCTTGGCCAGCTGCTCTGCTGAATGACATTTTGCTGACCTTGCATGCTCG TTTTAAGGCAACTCCAGATATGGCTGTCACTTTGCTTGAAATCGCTCGGATCTTTGCTACTAAAGTTCCCGGAAAGATCGATGCTGATGTGTTACAACTA TTATGGAAAACATGTCTTGTAGGTGCTGGCCCTGATGGAAAACATACAGCCTTGGAAGCAGTCACTATAGTTCTTGATCTACCACCACCACAACCCGGGT CACCATCGGGACTCACCCCAGTGGATAGGGTATCTGCGTCTGATCCAAAGTCTGCTCTTGCATTGCAGAAATTAGTCCAAGCAGCAGTGTGGTTCCTTGG TGAAAATGCAAACTATGCTGCTTCTGAGTATGCCTGGGAATCTGCAACCCCTCCTGGTACTGCATTGATGATGTTGGATGCTGATAAAATGGTTGCTGCA GCTAGTTCTCGTAACCCTACGCTTGCTGGTGCACTAACTAGATTACAGAGGTGTGCTTTCAGCGGCAGCTGGGAGGTTCGAATTGTTGCTGCTCAAGCCC TTACAACCATGGCAATCAGGTCTGGTGAGCCTTATAGGCTGCAGATTTATGAATTCTTAAATGCATTAGCACAGGGTGGTGTGCAGTCTCAGTTGTCAGA AATGCATCTCAGTAATGGGGAAGATCAAGGTGCGAGTGGGACAGGTCTTGGAGTCTTGATCAGTCCCATGATAAAGGTTCTTGATGAGATGTATATGGCA CAAGATGAATTGATAAAGGATATACGCAACCATGATAATACAAAAAAAGAATGGACAGATGATGAATTGAAGAAACTGTATGAAACCCACGAGAAGCTTC TAGACATTGTTTCACTCTTCTGCTATGTTCCGAGGGCAAAGTATCTACCTCTTGGTCCAATCAGTGCAAAACTCATTGATGGGTACCGCACAAAGCACAA CATAACTGCGTCAACTGGTTTAAGTGATCCAGCTGTTGTTGCAACTGGGATATCTGACCTAGTTTATGAATCTAAGCCAGCTCCTATTGAATCTGATGGC CTAGATGATGACTTAGTAAATGCTTGGGCAGCTAACCTTGGAGACGACGGCTTGTTGGGAAACAGTGCACCTGCAATGAGTAGGGTGAACGAATTTCTTG CTGGGATGGGAACGGATGCCCCTGATGTGGACGATGAGAATATTGTTTCCAGACCTTCAGTTGGATATGATGACATGTGGGCGAAGACACTTTTAGAATC ATCAGAACTAGAGGAAGAGGATGGTAGATCATCTGGTTCATCTTCCCCTGATTCCATAGGATCTGTTGAAACTTCAATTTCATCGCACTTTGGTGGAATG AACTATCCTTCGCTTTTCAGTTCGAAGCCGACCAATTACGGGGCATCACAAACCTCTGAGAGGTCATCAGGTGGCAGCAAATATGGCAACTCCTCCTCAA TTTACGAGGGTACACGTTCTCCGATTAGAGAAGAACCACCATCATACGAATCTTCGGTCATGCAAAGATACGAGTCATTTGAAAATCCCATGGCTGTGCC TGAGTCCTCCAGCTTCGAGTCTCGTGATGAAGAACGCAGCTCCTCCGGTAATCCTCAATTTGGAACGGCGCTCTATGACTTTACTGCAGGCGGAGATGAT GAGCTGAGTTTAACAGCAGGGGAAGAGGTTGAAATCGAGGATGAGGTTGATGGATGGTTCTATGTAAAGAAGAAACGTCCTGGAAGAGACGGAAAGATGG CCGGTTTGGTTCCTGTCCTATATGTCAATCAACGTTAA
AA sequence Show only first row Show all	>Lus10008548 pacid=23161013 polypeptide=Lus10008548 locus=Lus10008548.g ID=Lus10008548.BGIv1.0 annot-version=v1.0 MADSSGTTLMDLITADPGPKSAASGSTASAAAPSAVTASQLPQLPPVPMSAASTHSSGKSSLGEKKSKRATLMQIQNETISAAKAALHPMKTNIMPQKQK KKPVSYSQLARSIHELAATSDQKSSQKQLVHHVFPKLAVYNSVDPSLAPSLLMLNQQCEDRTVLRYVYYYLARILSDNGTQGLSSGGGIPTPNWDALADI DAVGGVTRADVVPRIIEQLSAEASNADTEFHARRLQALKALTYAPANNSDILARLYEIVFGILDKSIVRGNLQYASLSALRRLPLDPGNPVFLHRAVQGV SFTDPVAVRHALEIISEIAMKDPYGVAMALGKLALPGGALQDVLHLHDVLARVALARLCHTISRARALDERPDIKSQFNSVLYQLLLDPSERVCFEAVLC ILGKHDNAERYVLVLIVCYSLNVFHEILVVVKINVSTSLIGYDDEAGSHVCVTFSSVVTTSPLSCYYRTEERAAGWYRLTREMLKLPEASNDSKSSKEKS QKTRRPQPLIKLVMRRLESSFRSFSRPVLHAAARVVQEMGRSRAAAFSVGLTDIDEGVNINEFSDNAELDENENPYADGARKASSLSSSTGSKETIASLL ASLMEVVRTTVACECVYVRAMVIKALIWMQLPYESLDELESIIVSELSDPAWPAALLNDILLTLHARFKATPDMAVTLLEIARIFATKVPGKIDADVLQL LWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSPSGLTPVDRVSASDPKSALALQKLVQAAVWFLGENANYAASEYAWESATPPGTALMMLDADKMVAA ASSRNPTLAGALTRLQRCAFSGSWEVRIVAAQALTTMAIRSGEPYRLQIYEFLNALAQGGVQSQLSEMHLSNGEDQGASGTGLGVLISPMIKVLDEMYMA QDELIKDIRNHDNTKKEWTDDELKKLYETHEKLLDIVSLFCYVPRAKYLPLGPISAKLIDGYRTKHNITASTGLSDPAVVATGISDLVYESKPAPIESDG LDDDLVNAWAANLGDDGLLGNSAPAMSRVNEFLAGMGTDAPDVDDENIVSRPSVGYDDMWAKTLLESSELEEEDGRSSGSSSPDSIGSVETSISSHFGGM NYPSLFSSKPTNYGASQTSERSSGGSKYGNSSSIYEGTRSPIREEPPSYESSVMQRYESFENPMAVPESSSFESRDEERSSSGNPQFGTALYDFTAGGDD ELSLTAGEEVEIEDEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	0	1
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	2.2	0.9463
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	2.4	0.9545
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	3.2	0.9589
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	5.7	0.9479
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	7.3	0.9308
AT1G58230			binding (.1)		Lus10042867 [exp]	10.2	0.9496
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	10.9	0.9436
AT3G12590			unknown protein		Lus10001699 [exp]	11.6	0.9399
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	12.4	0.9271
AT1G30470			SIT4 phosphatase-associated fa...		Lus10038452 [exp]	13.3	0.8951

Compare expression of checked genes

Lus10008548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.