Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33540 387 / 1e-133 metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027583 [exp] 456 / 9e-161 AT4G33540 271 / 1e-88 metallo-beta-lactamase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169900 [exp] 464 / 3e-164 AT4G33540 422 / 3e-148 metallo-beta-lactamase family protein (.1) Potri.008G085751 [exp] 55 / 1e-09 AT4G33540 52 / 4e-09 metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008550 pacid=23160998 polypeptide=Lus10008550 locus=Lus10008550.g ID=Lus10008550.BGIv1.0 annot-version=v1.0 ATGGCGGTCGAACTCACGGCAGTAAACTTCACAGCACTGCGATACCCACAGGAACTGCTGCTGTCATCATCATCAGTACCCTTCTCAAGACCTCGAAGAT GTTGCCCAATCAAAGCAGTAAAGAGCGGAGGGGAGGAAGTAACAACAGCGCCTGGTGTTTCTCGTCCTCCGACCAGGGCTTCGTCTCTGAGACGCCCACA AAACGTCGAGGGAGAGTTCTTCGTCGACCGTAGATGCATAGATTGCGATACATGCCGATGGATGGCTCCACAAGTTTTTACACGAGTAGATGAAATGTCT GCAGTTTTTAAACAGCCCGTGTCCAGTGATGAGAGGTTGAATGCTCTTCAGGCCTTACTCTCATGTCCAACGAGTTCAATCCATACAGAGAAACCCACTC CTGATGTTCTGCAAGCTCAGAATACGTTCCCACTTCCAATAGACGAGAAGAAAATTCCGGGCATCTATCATTGTGGTTATCATTCCGAGAAGTCATATGG AGCTGCCTCCTACTTAATCATTCGTCCTGATGGAAATATACTCGTTGACAGTCCTAGATACAGTGAGAGGCTAGCTCGGAACATTGAGGCACTAGGAGGT GCAAGTTACATGTTTCTCACTCACATGGATGATGTGGCAGATCATGAAAAATGGTCAAAGAGATTAAACAGTGAGCGAATACTGCACACTGGAGATGTAA CTCCTGATACTGCTAATGTGGAAATCAAGCTGCAAGGAAATGGGCCATGGAGCCTTGGTGAGGATGTGGAGCTTATACACACCCCAGGACATACAGAAGG ATCTGCTTGCTTATACTCTAAGCCACAACGGATCTTGTTTTCCGGAGACCATCTTTTCATGACCGAGTTTGGATTGAGCATTGCTGAGAGATACAATCGC ATTTCAGTTCCCATGCAGCTGGACAGTGTGAGGAAACTGTTGAAATTGGACTTCGAGTGGATACTACCAGGTTTGTGGTTGCCGTGTATCGACTTCTTCG ACCTTGACATTGGTGAAGCTATAAGTAACTTGGTAGCCATTTTCGATTTTCGACTTCATTTGGCAGGTCATGGGCGAAGAGTTGTATTTTCGGACAGTGG GGAGAAAGATGCAGCTTTAGAGAAGTTTCTGCAACAGAAGTACGGCCGGGCTATACCATGA
AA sequence Show only first row Show all	>Lus10008550 pacid=23160998 polypeptide=Lus10008550 locus=Lus10008550.g ID=Lus10008550.BGIv1.0 annot-version=v1.0 MAVELTAVNFTALRYPQELLLSSSSVPFSRPRRCCPIKAVKSGGEEVTTAPGVSRPPTRASSLRRPQNVEGEFFVDRRCIDCDTCRWMAPQVFTRVDEMS AVFKQPVSSDERLNALQALLSCPTSSIHTEKPTPDVLQAQNTFPLPIDEKKIPGIYHCGYHSEKSYGAASYLIIRPDGNILVDSPRYSERLARNIEALGG ASYMFLTHMDDVADHEKWSKRLNSERILHTGDVTPDTANVEIKLQGNGPWSLGEDVELIHTPGHTEGSACLYSKPQRILFSGDHLFMTEFGLSIAERYNR ISVPMQLDSVRKLLKLDFEWILPGLWLPCIDFFDLDIGEAISNLVAIFDFRLHLAGHGRRVVFSDSGEKDAALEKFLQQKYGRAIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33540			metallo-beta-lactamase family ...		Lus10008550 [exp]	0	1
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	4.9	0.8862
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	5.3	0.9015
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	8.6	0.8959
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10016358 [exp]	10.0	0.8572
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	13.2	0.8845
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	14.5	0.8630
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	18.0	0.8666
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	20.5	0.8859
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10028166 [exp]	22.8	0.8443
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10023134 [exp]	22.8	0.8258

Compare expression of checked genes

Lus10008550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.