Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58100 150 / 2e-42 unknown protein AT1G71270 72 / 4e-15 ATVPS52, TTD8, POK T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) AT1G71300 69 / 4e-14 Vps52 / Sac2 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027581 [exp] 206 / 4e-62 AT5G58100 1451 / 0.0 unknown protein Lus10040815 [exp] 82 / 1e-18 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1) Lus10016549 [exp] 82 / 1e-18 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080700 [exp] 177 / 4e-52 AT5G58100 1315 / 0.0 unknown protein Potri.018G150600 [exp] 176 / 2e-51 AT5G58100 1362 / 0.0 unknown protein Potri.006G027100 [exp] 69 / 5e-14 AT1G71270 1189 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04129 [flax] [poplar] Vps52 Vps52 / Sac2 family
Representative CDS sequence Show only first row Show all	>Lus10008551 pacid=23161020 polypeptide=Lus10008551 locus=Lus10008551.g ID=Lus10008551.BGIv1.0 annot-version=v1.0 ATGGCTGTCGATGACTTGATTATCAAGCTTGCTAGCAAATTCCCTAAACCAAAACAACAGTTTGTTTTCCTCATAAACAACTATGACATGACAATTGCAG TAGTCAAGGAAGCAGGTCCTCTGAAGGTTGGAAAATTGAAATGCACTTTGAAGAACTATTTTAAGCTTCATCCAGATGAACTTGAGCGTTGGTTCACGAA AATCGATCACATCTTTGAACATACAAGAGTACCCAAAATTGGCGAAGTTCTTATTCCATTTTACAAGATCAGTGTTGACAAAGGACAACGACATCACCTT CCCATTATCAGCCACATAAACTACAAGGACGAGAAGGATGCTCTTTGGCAAGTGGACATGGACATGATGGATGTTATTTTCACAAGCCTCGTTGAATACC TTGAACTTGATCATGCGTATAACGTTTTCATTTTGAATCCCAAGCATGACTTAAAGAGAGCTAAATATGGTTATCGGTGCGTATGA
AA sequence Show only first row Show all	>Lus10008551 pacid=23161020 polypeptide=Lus10008551 locus=Lus10008551.g ID=Lus10008551.BGIv1.0 annot-version=v1.0 MAVDDLIIKLASKFPKPKQQFVFLINNYDMTIAVVKEAGPLKVGKLKCTLKNYFKLHPDELERWFTKIDHIFEHTRVPKIGEVLIPFYKISVDKGQRHHL PIISHINYKDEKDALWQVDMDMMDVIFTSLVEYLELDHAYNVFILNPKHDLKRAKYGYRCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58100			unknown protein		Lus10008551 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	12.1	0.9015
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	15.4	0.8995
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	17.7	0.8910
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013094 [exp]	21.6	0.8677
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	25.4	0.8883
AT1G58230			binding (.1)		Lus10042867 [exp]	25.5	0.8894
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10009204 [exp]	26.7	0.8867
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10015033 [exp]	33.0	0.8843
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	33.3	0.8845
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000460 [exp]	35.6	0.8844

Compare expression of checked genes

Lus10008551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.