Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58100 842 / 0 unknown protein AT3G28720 71 / 1e-12 unknown protein AT4G16180 49 / 9e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027581 [exp] 1035 / 0 AT5G58100 1451 / 0.0 unknown protein Lus10033019 [exp] 74 / 3e-14 AT3G28720 450 / 2e-155 unknown protein Lus10015362 [exp] 74 / 9e-14 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 46 / 8e-05 AT3G28720 599 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150600 [exp] 885 / 0 AT5G58100 1362 / 0.0 unknown protein Potri.006G080700 [exp] 879 / 0 AT5G58100 1315 / 0.0 unknown protein Potri.017G078700 [exp] 70 / 2e-12 AT3G28720 823 / 0.0 unknown protein Potri.004G123900 [exp] 69 / 6e-12 AT3G28720 852 / 0.0 unknown protein Potri.010G146800 [exp] 49 / 1e-05 AT4G16180 1235 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008552 pacid=23161017 polypeptide=Lus10008552 locus=Lus10008552.g ID=Lus10008552.BGIv1.0 annot-version=v1.0 ATGATGATTTATCTGGATATTCAGGTCTTGAAAGGGAAGAACACCTACATGAAGCTTCTTCTGCAGAAGGAACTAAAATCTGGAGACCTTGCTGGGTTTC AACCAGAATGTCTCACTGATACCTGGATTGGAATGGATAGGTGGGCTTTCATTGATCTATCTGCAGGCCCTTTCTCATGGGGTCCTGCCGTGGGTGGGGA AGGGGTCCGCACTGAACTTAGTCTACCAAATGTGGAGAAAACAATTGGTGCAGTTCAAGAGATTTCTGAAGATGAAGCTGAAGACCGCTTGCAAGAAGCA ATCCAGGAAAAATTTGCGATATTTGGTGATAAAGACCACCAGGCGATCGATATCCTTCTCGCTGAAATTGATATCTATGAGCTTTTTGCTTTCAAGCACT GTAAAGGGAGAAAAGTTAAACTAGCACTTTGTGAAGAGCTTGATGAGAGAATGAAGGACTTGAAAAGTGAACTTCAGTCCTTAGAAGGTGAAGAATATGA TGAGAGCCATAAGAAGAAGGCTATTGAGGCATTGAAACGCATGGAAGGCTGGAATCTTTTCACCGACCCTCATGAGGATTTCCAAAATTACACTGTTGCA CGGGATACCTTTCTTGCACATTTAGGTTCAACACTTTGGGGGTCAATGAGACACATAGTTTCACCTTCGATTGCTGATGGTGCATTCCATTACTATGAGA AGATATCTTTTCAATTGTTTTTCATAACACAGGAGAAAGTTAGAAGTATTAAACATTTACCTGTAGATCTCAATGCTATCATGGATGGGCTTTCATCTTT GTTATTACCTTCGCAGAAACCTATGTTCAGTCCAAATTTGTTACCACTCTCAGAGGATCCTGCTCTAGCAATGGCTTTTTCAGTGGCACGACGAGCAGCA GCTGTCCCCCTATTGCTTGTGAATGGAACATATAGGAAAACTGTTCGTACCTATCTTGACTCCTCCATTCTTCAGTATCAGTTGCAGAAGCTGAATGATC ATGGTTCTCTTAAAGGAGCACATGCCCATACCAGATCTACACTCGAAGTTCCCATATTTTGGTTCATTCATGGAGAGCCATTGTTAGTCGACAAGCATTA TCAAGCAAAATCGCTTTCTGACATGGTTATTGTTGTTCAGTCAGAGCAATCATCATGGGAAAGCCATCTCCAGTGTAATGGACAATCACTCCTCTGGGAC TTGAGGAGACCCGTAAAAGCTGGTCTTGCAGCTGTTTCTGAACATCTGGCCGGTTTACTTCCTCTTCACCTGGCATACAGCCATGCTCATGAAACTGCAA TTGAGGATTGGATATGGTCGGTAGGATGCAATCCTTTCTCCATAACATCTCAGGGCTGGGATATCTCAAAATTCCATTCTGATACAATTGCTCGGAGTTA CATAATCACCACTCTTGAAGAGTCCATACAGCTAGTCAATTCAGCCATACGCCGCCTACTCATGGAGAGGACATGTATCCTTATGTTTTCTGCGCAAGTG AATGAAACAATGGATCTTCTGCATCCGATCCACTGCACAAGAGAGCGGAAAGTACAAGTGGTGTTTGATATGACAACAATTCCAGCATTTGTGATTGTTG CTGCTGTTTTGTATGTGGTGTTGAAGCCAGGAAGAGCCAAGCCTAAGATTAATTAG
AA sequence Show only first row Show all	>Lus10008552 pacid=23161017 polypeptide=Lus10008552 locus=Lus10008552.g ID=Lus10008552.BGIv1.0 annot-version=v1.0 MMIYLDIQVLKGKNTYMKLLLQKELKSGDLAGFQPECLTDTWIGMDRWAFIDLSAGPFSWGPAVGGEGVRTELSLPNVEKTIGAVQEISEDEAEDRLQEA IQEKFAIFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMKDLKSELQSLEGEEYDESHKKKAIEALKRMEGWNLFTDPHEDFQNYTVA RDTFLAHLGSTLWGSMRHIVSPSIADGAFHYYEKISFQLFFITQEKVRSIKHLPVDLNAIMDGLSSLLLPSQKPMFSPNLLPLSEDPALAMAFSVARRAA AVPLLLVNGTYRKTVRTYLDSSILQYQLQKLNDHGSLKGAHAHTRSTLEVPIFWFIHGEPLLVDKHYQAKSLSDMVIVVQSEQSSWESHLQCNGQSLLWD LRRPVKAGLAAVSEHLAGLLPLHLAYSHAHETAIEDWIWSVGCNPFSITSQGWDISKFHSDTIARSYIITTLEESIQLVNSAIRRLLMERTCILMFSAQV NETMDLLHPIHCTRERKVQVVFDMTTIPAFVIVAAVLYVVLKPGRAKPKIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58100			unknown protein		Lus10008552 [exp]	0	1
AT3G46220			unknown protein		Lus10004920 [exp]	1.4	0.8549
AT3G01380			transferases;sulfuric ester hy...		Lus10039444 [exp]	2.0	0.8356
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	3.9	0.8211
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	7.9	0.8047
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	8.7	0.8105
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	10.2	0.8141
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Lus10015959 [exp]	14.5	0.7765
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	17.2	0.7591
AT1G77680			Ribonuclease II/R family prote...		Lus10009879 [exp]	19.2	0.7090
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	19.5	0.7936

Compare expression of checked genes

Lus10008552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.