Lus10008553 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32750 1301 / 0 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
AT3G19040 1160 / 0 TAF1b, HAF2, TAF1 TBP-ASSOCIATED FACTOR 1B, TBP-ASSOCIATED FACTOR 1, histone acetyltransferase of the TAFII250 family 2 (.1)
AT5G55040 59 / 3e-08 DNA-binding bromodomain-containing protein (.1.2)
AT1G20670 58 / 6e-08 DNA-binding bromodomain-containing protein (.1)
AT5G46550 54 / 1e-06 DNA-binding bromodomain-containing protein (.1)
AT2G34900 53 / 1e-06 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
AT1G76380 53 / 2e-06 DNA-binding bromodomain-containing protein (.1.2.3)
AT3G01770 49 / 2e-05 ATBET10 bromodomain and extraterminal domain protein 10 (.1)
AT3G27260 47 / 0.0002 GTE8 global transcription factor group E8 (.1.2)
AT1G06230 46 / 0.0002 GTE4 global transcription factor group E4 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027579 3117 / 0 AT1G32750 1622 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Lus10043121 61 / 1e-08 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2)
Lus10030739 58 / 6e-08 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1)
Lus10013220 57 / 2e-07 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1)
Lus10032629 56 / 5e-07 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2)
Lus10002784 55 / 5e-07 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1)
Lus10001391 54 / 7e-07 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1)
Lus10022999 54 / 8e-07 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1)
Lus10014609 51 / 8e-06 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G113300 1725 / 0 AT1G32750 1585 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Potri.017G047600 1702 / 0 AT1G32750 1776 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Potri.006G112000 61 / 7e-09 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1)
Potri.004G206200 61 / 1e-08 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1)
Potri.016G141400 60 / 1e-08 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1)
Potri.019G132601 59 / 3e-08 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1)
Potri.002G009100 59 / 4e-08 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1)
Potri.001G376400 58 / 4e-08 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3)
Potri.009G167500 56 / 2e-07 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1)
Potri.011G096400 56 / 2e-07 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0662 Triple_barrel PF12157 DUF3591 Protein of unknown function (DUF3591)
CL0662 PF00439 Bromodomain Bromodomain
CL0072 Ubiquitin PF00240 ubiquitin Ubiquitin family
Representative CDS sequence
>Lus10008553 pacid=23161007 polypeptide=Lus10008553 locus=Lus10008553.g ID=Lus10008553.BGIv1.0 annot-version=v1.0
ATGTCTTATTTTGTTCAACATGGGTTGGTTATGGTAGATTACAATGACAAGGCTGAAGATGCAGTGGATTATGAAGATATTGATGAAGACTATGATGGTC
CTGAAATTCAAGATGCGGGAGAGGAGGAATACTTATTACCAAAAAAGGAATTCTTTTCTGCTGACGTTTCTCTGTCTGCTCTAAGGCCTACGACTTCAGT
CTTTGACGATGAAAATTACGATGAAGATGAGGAAGATAAAGAAGAGGAACATGTTACTGTGGAAGATAGACCTGGAGTTGCGACTTCTTTGTCAGGTCCG
AATGTGACTGTGGTTTCAGAAGGAGAACAATCCCCTCAAGATGTTACACAACGAACTCTAGATGACGGAACTTCAAAGTTTGAGTTGGAAGATCTGCATG
GGGTTGCGGTACAAGAGCAAAACGAGACAGAATTTAAGGGTTCCACTCCACTACCTATTCTTTGTGTAGAAGATGGTATGGTGATTTTAAAGTTCTCTGA
AATATTTGGGATTCATGAACCTTTGAAGAATGTGCCTAAAAGGGAACATAGATATGCCACTTGCAAAGAGCAAAACGAGCCTGTAGATATTTCAGATATT
GTTGAAGATGATGAAGAGGCCTTTTTGAGAGGATCAAATCAAGTAACTTCATCATGTCCACATGATATATCAACTTGTTATGACGAGGACTTGGGATTGT
CAAATCGTGAAGGAGCGTTTCAGATGTCTGGTCCAACCAAGGAACTAGGAAAGGACATTTGTCTTAGTGGTGAACCAATGAGTGATGATTTGACAGCAAG
CATAGCTGTTGGATGGAAATCACAATGCTCTTCAACATTTTTTCTTCTTGATCAACATGATTGGGAAGATAGAATTCTCTGGGATGACTACCCTGCTGCA
AGTGAAAGTAGCTTAGATTGTAATGATGTACCTATGCACGATTCAGGCGTAGACGAAGGAGAAGAAAATCTGCAACCACAGTCCTTACTGCAGTTTAGTG
AGAAAGAACATAATCTTCCATCACATAGCTCACATGTTGTCTTGGAGTCCTTCAGATCTGAAGAAAGCCTAGACCATAGCCGCTCATCTTCTGGGGGAAA
GTGCCATCCACAACTTCTGAGGCTAGAGTCTCTGCTGGATGTTGATAAAAGTAATGATGTCAACAGCAAAAAGGAGAGCAAAGAGATGGAGCGTCCCCAT
ATTGGCTCTTTAAGGCGTTTTAGTGCGCTCTCATTGCAGAACAGAGACATCTTGGAAGGTTCTTGGTTAGATAATATAATATGGGACCAGCAAAAGACTA
ATGTGAGGCCTAAGCTAATTCATGACCTTCAAGATGAGCAAATGCTTTTTGAAATTTCAGATGATAAAGAGAGCGAAAAACTGCAGCTCCATGCAGGGGC
AATGATCATAACTCGTTCTTCAAAGTCTATAGGCTCTTCAGAGTTTTCCGATCAAAGATACCAGTCATGCTGGCAATTTAATATTGCTAATGACAAATTC
TATACGAACAAGAAAATTTCTCAACAACTGCAATCAAATTCTAGCAAACGAGTTCCTTATGGTATCAAAGTTCATCATTCTGCACCAGCAATAAAATTGC
AAACCTTCAAATTGAAGCTAATCAATAAAGATTTGGCTAATTTTCATCGACCAAAATCCTTGTGGTTTCCTCATGACAATGAGGTGGCTGTCAAACATCA
AGGAAAGCTGGCTACAACGGGACCGATGATAGTAATTTTGAAGAGCTTAGGTGGCAAGGTTACCAAACTTCATGTAGATGCCGAGGAAACTCTTTCTTCT
GTTAAGTCAAAGGCTTCCAAAAAGCTAGATTTTAAGCCAACAGAAGCGGTGAGGGTGCTCTATGCTGGAAAGGATCTTGAAGACCAAATATCACTTGCCG
CTCAAAATGTTAGACCAAACTCTTTGCTTCATCTTGTTCGGACCAAGATTCATTTGCTTCCAAAGGCACAAAGGATTCCCGGTGTGAACAAATCGCTACG
TCCTCCAGGAGCGTTTAAGAAGAAATCGGATCTGTCTGTAAAAGATGGTCATGTCATTTTGATGGAGTATTGTGAGGAAAGACCTTTGTTGATAAGCAAT
GTTGGGATGGGGGCAAATTTGCGCACTTACTACCAAAAGACTAGCCCCGGTGATCAAACTGGCTTATTGTTGCGCAACAGAGATGGCCGTTGGGGAAATG
TCGTGACACTTGATCCTAATGATAAATCACCTTTTCTCGGAGATATAAAACCTGGTTGCTGCCAGTCATCTCTTGAAACAAACATGTATAAAGCACCAAT
ATTTCCACACAAGGTGTCATCTACAGATTATTTATTGGTTCGTTCGGCCAAAGGAAAGTTGTCATTAAGACGCATCGACAGAGTTGCTGCTGTTGGACAA
GAGGAGCCTATTATGGAGGTTTTCTCTCCTACATCTAAGAGTCTTCAAGCATATGCATTGAACAGGTTACTGGTGCATGTTTATCGTGAGTTTAGGGCTG
CTGAAAAGGGTGGCTTGATTCAATGGATCCGTACAGATGAGTTGACAACTCAGTTTCCAGGTGTCGCGGATACCATCTTAAGAAAGAAGATGAAGGAATG
CGCTGTACTCCGGAGGGATGCGCATGGAGATATGTTTTGGTTCAAGAAAAGGGATTTTATTATACCATCTGAAGAAGAGTTGAAAAAAATGGTGACCCCT
GAGAATGTATGTGCATATGAGAGTATGCAAGCTGGTATGTACCGTCTAAAGCATTTAGGAATTAGCAGGCTAACACTTCCTACTAGTGTTTCCAGTGCAA
TGAGCCAGCTACCTGATGAAGCAATAGCCTTGGCTGCTGCATCACATATTGAGAGGGAATTGCAAATTACTCCGTGGAGCCTAAGTAGCAATTTTGTTGC
CTGTACAAATCAGGACAGAGAAAACATTGAGCGGCTTGAAATTACAGGTGTTGGTGATCCATCTGGTCGCGGGTTAGGATTCAGCTATGTCCGTGCCACT
CCAAAGGGATCAGTGTCAAACGCTATGGTCAAGAAAAAGGCAGCTGCTGGTCGAGGAGGATCAACTGTCACTGGAACCGATGCTGACCTCCGTAGATTGA
GCATGGAGGCTGCACGAGAGGTTCTTCTCAAGTTTGATGTTCCGGATGAACAGATTACAAAACTGACGAGGTGGCATCGCATAGCTTTGATACGGAAGCT
TTCTAGCGAACAGGCTGCATCTGGGGTGAAAGTAGACCCAACAACGATAAGCAAATATGCACGTGGCCAACGGATGTCCTTTCTTCAGTTACAGCAACAG
ACGAGAGAAAAATGCCAAGAAATCTGGGATCGTCAAGTTCAGTCTCTTTCGGCAGTCGATGGTGATGAGAATGATAGTGATTCTGAGGCAAATAGTGATC
TAGATTCGTTTGCTGGGGACCTGGAGAACCTACTTGATGCTGAGGAGTGTGAAGGTGATGAAAGTAATTATGAGTCTAAGCGTGATAAAGGAGACGGTGT
TAAGGGTCTAAAAATGAGAAGACACCCCTCACAAACTCAAGCTGAAGAGGAAAATGAAGATGAAGCTGTAGAGGCAGCTGAACTGTGCAGGCTGCTCATG
GATGGTGAGGCTGAGCAGAAGAAGAAAAAAAAGACTAAAGGTGCTGGGCTGGATGCACTGTTGCCAACAGGTTCGAAATTAAATGTGGTTGACAGTGTAG
AACATGTCAAGAAAGCAATCAAGCCACAACCTATTGAATTGCATGTCTTAAACGACAAGGGTAGGGAAATCAAGGAGGTAGAGAGCATATTTGGTAAAAA
GAAAGTACCTGATAAGTTGAAGTCGATTAAGAAAATTGATATCCCCTCCCTGCCTCAAATTAAAGCAAAAGGGTTCAAGGAGAAGAAGTCATCGAGAGAG
AGTTTTGTCTGTGGAGCATGTGGTCAGCTCGGACACATGAGAACAAATAAGAACTGTCCTAGGTATCGTGAAGAACTTGAAACACCAGTTGAGCCTGTGG
ATGTGGAGAAAGATTCTGGAAAGTTGATTTCTGTTGATCCTTCTAACAAGGCTCAGCAGAAAATTCAAAAGAAAAAGGTTGTGCCGAAAACTGGAGTTAG
AAATGACGTTCAACAGCTCCCCGTAAAGTTTAAATGTGGCTCGACAGAAGTTCCTTTTGAGAAACCTGCACCTACTGTTGAAGCTTCTCAGAGTTGTGAC
CAAAATATCAATATCAGTGCACTGCCAGTCAGTTCTGATACTGATACTGGAAACAAATCGATCACTAAGATAAAAATTGCCAGCAAGGGAAGACCTGAGG
TTGCATCAGTGCACAGGCCGTTTCAGATACAGCAGCCTCCACTGGATACAGATAGAGGCGTAAAAGAATCTTATCGTCCCCCTGTCACCATCAAGCCACC
AGTAATTGTGGAAAAAGACCGTCTCGAGACTAGGAAAACTATTCTTATCCGTCCTCCAGCAGACAGAGAGAAAGACCCGTCACGTAGGAAAGTGGTTATC
AGACAACCTAGGGAAGTTTGGGATGTGGACCAGATGAGTCAGGATGGAAGCTCTGGTTTTGAGTACCAGAAGACGAAGAAAATCGTTGAACTATCAAATT
TTGAGAAGCAGAGGAAGCTGGAGACTCTACATTTTACAGGAGGATCTGCAAAGAAGAAGTCGAAAGAGGAGGTAAGGTGGTTGGAGGAGGAAGAGAAGAG
GAGAAACGTGGAGAGGTTAAGGGAAGAAAGAAGAATGAGGGCCGATCAGGAAACCAGAAGGTTAATTAAAGAACGGGAATTCAGAGAATACGAAGAAACG
ATGGGAAGGGGAAGGGAGGAGGAAGAAGAAGAAGAAGAACGTCAAAGAGCCAAGAAAAAGAAAAGGAAGGAAAGGCCAGAAATTAGTGACGAGTATATGG
AAGACTACAAAGATAGGAGAAACGATAAAAGAATGGCTGAAAGAGACAGGGGCTTCAAGAGGCAACTAGCTGCTGGTGAATTGGGGAGATACGGTGCTAA
GTATGCCCCGCCAACAAAACGTCGAAGAGGTGGAGAGGTTCTTCTGTCAAATGCGTTGGAGGGGATTGTAGACACCCTGAGAGAGAGGCGTGAGCTATCG
TATCTGTTCCTAAAACCGGTATCGAAGAAGGAGGCCCCGGATTACTTGAAGATCATAGAGAGGCCTATGGATCTTTCGACGATAAAAGAGAAGGTGAGGA
AAATGGAGTACAAGAGCAGAGAGGAGTTTAGGCGTGATGTGTGGCAGATAACTTTTAATGCACACAAGTACAACGACAGGAGGAACCCAGGTATTCCTCC
ACTGGCTGATCAGCTTTTGGAAATCTGTGACTTTTTGTTGCATGACAAGGCTTCGGAATTAGATGAGGCTGAAGCTGCGGTGGGAATCTAG
AA sequence
>Lus10008553 pacid=23161007 polypeptide=Lus10008553 locus=Lus10008553.g ID=Lus10008553.BGIv1.0 annot-version=v1.0
MSYFVQHGLVMVDYNDKAEDAVDYEDIDEDYDGPEIQDAGEEEYLLPKKEFFSADVSLSALRPTTSVFDDENYDEDEEDKEEEHVTVEDRPGVATSLSGP
NVTVVSEGEQSPQDVTQRTLDDGTSKFELEDLHGVAVQEQNETEFKGSTPLPILCVEDGMVILKFSEIFGIHEPLKNVPKREHRYATCKEQNEPVDISDI
VEDDEEAFLRGSNQVTSSCPHDISTCYDEDLGLSNREGAFQMSGPTKELGKDICLSGEPMSDDLTASIAVGWKSQCSSTFFLLDQHDWEDRILWDDYPAA
SESSLDCNDVPMHDSGVDEGEENLQPQSLLQFSEKEHNLPSHSSHVVLESFRSEESLDHSRSSSGGKCHPQLLRLESLLDVDKSNDVNSKKESKEMERPH
IGSLRRFSALSLQNRDILEGSWLDNIIWDQQKTNVRPKLIHDLQDEQMLFEISDDKESEKLQLHAGAMIITRSSKSIGSSEFSDQRYQSCWQFNIANDKF
YTNKKISQQLQSNSSKRVPYGIKVHHSAPAIKLQTFKLKLINKDLANFHRPKSLWFPHDNEVAVKHQGKLATTGPMIVILKSLGGKVTKLHVDAEETLSS
VKSKASKKLDFKPTEAVRVLYAGKDLEDQISLAAQNVRPNSLLHLVRTKIHLLPKAQRIPGVNKSLRPPGAFKKKSDLSVKDGHVILMEYCEERPLLISN
VGMGANLRTYYQKTSPGDQTGLLLRNRDGRWGNVVTLDPNDKSPFLGDIKPGCCQSSLETNMYKAPIFPHKVSSTDYLLVRSAKGKLSLRRIDRVAAVGQ
EEPIMEVFSPTSKSLQAYALNRLLVHVYREFRAAEKGGLIQWIRTDELTTQFPGVADTILRKKMKECAVLRRDAHGDMFWFKKRDFIIPSEEELKKMVTP
ENVCAYESMQAGMYRLKHLGISRLTLPTSVSSAMSQLPDEAIALAAASHIERELQITPWSLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAT
PKGSVSNAMVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFDVPDEQITKLTRWHRIALIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQ
TREKCQEIWDRQVQSLSAVDGDENDSDSEANSDLDSFAGDLENLLDAEECEGDESNYESKRDKGDGVKGLKMRRHPSQTQAEEENEDEAVEAAELCRLLM
DGEAEQKKKKKTKGAGLDALLPTGSKLNVVDSVEHVKKAIKPQPIELHVLNDKGREIKEVESIFGKKKVPDKLKSIKKIDIPSLPQIKAKGFKEKKSSRE
SFVCGACGQLGHMRTNKNCPRYREELETPVEPVDVEKDSGKLISVDPSNKAQQKIQKKKVVPKTGVRNDVQQLPVKFKCGSTEVPFEKPAPTVEASQSCD
QNINISALPVSSDTDTGNKSITKIKIASKGRPEVASVHRPFQIQQPPLDTDRGVKESYRPPVTIKPPVIVEKDRLETRKTILIRPPADREKDPSRRKVVI
RQPREVWDVDQMSQDGSSGFEYQKTKKIVELSNFEKQRKLETLHFTGGSAKKKSKEEVRWLEEEEKRRNVERLREERRMRADQETRRLIKEREFREYEET
MGRGREEEEEEEERQRAKKKKRKERPEISDEYMEDYKDRRNDKRMAERDRGFKRQLAAGELGRYGAKYAPPTKRRRGGEVLLSNALEGIVDTLRERRELS
YLFLKPVSKKEAPDYLKIIERPMDLSTIKEKVRKMEYKSREEFRRDVWQITFNAHKYNDRRNPGIPPLADQLLEICDFLLHDKASELDEAEAAVGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32750 GTD1, TAF1, HAF... TBP-ASSOCIATED FACTOR 1, HISTO... Lus10008553 0 1
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Lus10035640 4.5 0.8006
AT5G63200 tetratricopeptide repeat (TPR)... Lus10013661 10.2 0.7471
AT5G58410 HEAT/U-box domain-containing p... Lus10042236 12.3 0.7512
AT4G34310 alpha/beta-Hydrolases superfam... Lus10021747 17.5 0.7150
AT1G14780 MAC/Perforin domain-containing... Lus10034586 18.5 0.7148
AT1G17680 tetratricopeptide repeat (TPR)... Lus10042212 19.4 0.7487
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Lus10005501 20.1 0.7180
AT4G02480 AAA-type ATPase family protein... Lus10010282 27.2 0.7301
AT5G23080 TGH TOUGH, SWAP (Suppressor-of-Whi... Lus10000866 28.6 0.7342
AT4G02480 AAA-type ATPase family protein... Lus10036347 30.2 0.7254

Lus10008553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.