Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 453 / 8e-156 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G20660 67 / 1e-11 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT2G35740 62 / 8e-10 ATINT3 nositol transporter 3 (.1) AT2G18480 60 / 2e-09 AtPLT3 Major facilitator superfamily protein (.1) AT4G16480 58 / 1e-08 ATINT4 inositol transporter 4 (.1) AT2G16130 56 / 3e-08 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G18830 56 / 5e-08 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 54 / 2e-07 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT4G36670 54 / 2e-07 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT1G30220 54 / 2e-07 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027577 [exp] 917 / 0 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 591 / 0 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10018992 [exp] 467 / 5e-161 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 450 / 1e-154 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 459 / 4e-152 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 405 / 6e-137 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 277 / 7e-88 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 265 / 2e-83 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10011995 [exp] 94 / 2e-21 ND 96 / 2e-22
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150700 [exp] 540 / 0 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 482 / 4e-166 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 475 / 2e-164 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 466 / 2e-160 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 388 / 1e-127 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.011G130533 [exp] 75 / 4e-14 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.004G151725 [exp] 66 / 2e-11 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 64 / 9e-11 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 63 / 2e-10 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.010G174300 [exp] 62 / 4e-10 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10008555 pacid=23161003 polypeptide=Lus10008555 locus=Lus10008555.g ID=Lus10008555.BGIv1.0 annot-version=v1.0 ATGGGTGGTTTGGTGGCGATGGAAGTGGAGATGAAATCAATTGACGGAGATTCGTTGAATGGTTGCGAACAGATGGAGCGCGAAGCGCAATCGTACAATC TGGATGAAGCTCTGGCCTCCGTTGGGTTCGGGAAATTCCAAATCCTGGTGCTTTTCTACGCTGGGTTTGGTTGGTTTGCGGAGGCAATGGAGATTATGAT ATTGTCCTTCGTTGGTCCTGCGGTTAAGTTGGAGTGGGGGCTCACCGCAAACCAAGAGAGCCTTCTAACGACGGTTGTATTTGCTGGTATGCTGCTTGGA GCCTATTCATGGGGCATTATCTCTGACAAATGTGGAAGAAGGCAAGGCTTTATTGGAGCTGGGTTGATAAGTGCTTTCTCTCCAAATTACCTATCGTTGG TGATTCTTCGTTGTTTGGTTGGTTTTGGACTTGGTGGTGGACATGTATTCTTGTCCTGGTTTCTTGAGTTTGTTCCTGCTTCACATAGAGGCAAGTGGAT GGTTGTCTTCACAACATTCTGGACCGTTGGAACTATATTTGAAGCTTTGCTTGCCTGGGTTGTTATGCCATCACTAAACTGGAGATGGCTGCTTGGATTT TCAGTCATACCGTCTTTCTGTCTACTTCTCCTCTACGGGATTGCACCAGAGTCTCCTCGCTATCTGTGCATGAAAGGAAGAACAGTAGAGGCACATCGCA TTCTCGCAAAGATGGCACTGCTGAACTCTAAAAAACTACCTCTTGGCACGCTTGTCACCAATGGACCGATTGTGGTGGATGACGAAGAATCTGCTCCTTC AGAAAACGAACCACTTCTCTATGCAGCTAAGAAACAGATCCAGGAGTTCAAGTCAAACTTCTCATCATTTATTGTACTCTTCTCCCCGAAACTACTCAAG ACAACAATTCTTCTCTGGATCATATTCTTCGGGAATACATTTGCCTACTATGGCATTATATTGCTTACTTCTGAGCTAAGTCATGGAGAAGGAAAATGCG GGATGAGCCTCTATCACTCGGGAGAAGGACATGTAGATGATGGTAATAGCTCGTATGTAGATGTGCTCATCACTAGCTGTGCTGAATTTCCAGGGCTTGT TCTGTCTGCACTAACTGTGGATCGATTTGGCCGCAAATTTTCAATGGTGATTATGTTCTTCCTAGCATGGGTATTCCTGATACCATTGGTGTTCCAGCAA ACTCCTCTAGTGACGACAGGGTTATTGTTTGGAGCTCGAATGTGTGCACTAGGATCCTTCACTGTGGCTTGTGTTTATGCACCAGAGCTATATCCAACCT CAGCAAGAGCAACAGGAGCAGGAGCAGCGAATGCAATAGGAAGAATAGGAGGGATGCTGTGCCCTCTGGTGGCAGTTGGATTGGTATCAAGTTGCCATGT AAGGGAAGCCATTGTTTTGTTTGAGATTGTAATAGCATTATCAGTGGGTTGCATTCTTCTCTTCCCTTTTGACACAACAGGGAAGGACCTTAGTGACAAT ATTGTAGCAGCAGATCCTAAGAAAGAGCTTGCAGATGGAAGTTAG
AA sequence Show only first row Show all	>Lus10008555 pacid=23161003 polypeptide=Lus10008555 locus=Lus10008555.g ID=Lus10008555.BGIv1.0 annot-version=v1.0 MGGLVAMEVEMKSIDGDSLNGCEQMEREAQSYNLDEALASVGFGKFQILVLFYAGFGWFAEAMEIMILSFVGPAVKLEWGLTANQESLLTTVVFAGMLLG AYSWGIISDKCGRRQGFIGAGLISAFSPNYLSLVILRCLVGFGLGGGHVFLSWFLEFVPASHRGKWMVVFTTFWTVGTIFEALLAWVVMPSLNWRWLLGF SVIPSFCLLLLYGIAPESPRYLCMKGRTVEAHRILAKMALLNSKKLPLGTLVTNGPIVVDDEESAPSENEPLLYAAKKQIQEFKSNFSSFIVLFSPKLLK TTILLWIIFFGNTFAYYGIILLTSELSHGEGKCGMSLYHSGEGHVDDGNSSYVDVLITSCAEFPGLVLSALTVDRFGRKFSMVIMFFLAWVFLIPLVFQQ TPLVTTGLLFGARMCALGSFTVACVYAPELYPTSARATGAGAANAIGRIGGMLCPLVAVGLVSSCHVREAIVLFEIVIALSVGCILLFPFDTTGKDLSDN IVAADPKKELADGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	0	1
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	1.4	0.9048
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	2.8	0.8900
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	2.8	0.8730
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	5.2	0.8443
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	7.7	0.8776
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	10.0	0.8422
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	11.2	0.8611
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	12.2	0.8635
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	13.0	0.8375
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	13.2	0.8213

Compare expression of checked genes

Lus10008555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.