Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28400 345 / 1e-119 Protein phosphatase 2C family protein (.1) AT2G20630 342 / 8e-119 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G22280 335 / 4e-116 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT3G15260 324 / 2e-111 Protein phosphatase 2C family protein (.1.2) AT1G34750 320 / 6e-110 Protein phosphatase 2C family protein (.1) AT1G78200 306 / 2e-104 Protein phosphatase 2C family protein (.1.2) AT2G34740 282 / 2e-94 Protein phosphatase 2C family protein (.1.2) AT4G31750 209 / 5e-66 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 200 / 4e-61 Protein phosphatase 2C family protein (.1) AT5G10740 195 / 4e-60 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040565 [exp] 494 / 1e-178 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 487 / 1e-175 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 331 / 3e-114 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 329 / 2e-113 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 328 / 3e-113 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 293 / 2e-99 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 287 / 5e-97 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10005405 [exp] 272 / 4e-91 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 239 / 3e-77 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081400 [exp] 462 / 8e-166 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 456 / 3e-163 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 342 / 2e-118 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 341 / 3e-118 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.002G097200 [exp] 341 / 3e-118 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.011G116700 [exp] 334 / 2e-115 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.017G013300 [exp] 328 / 4e-113 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 208 / 6e-66 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 204 / 2e-64 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 197 / 1e-61 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10008556 pacid=23161009 polypeptide=Lus10008556 locus=Lus10008556.g ID=Lus10008556.BGIv1.0 annot-version=v1.0 ATGAGTAGACACCAGGCTACATCTTCTTCCGGAGGAGGAGGAGGAGGCACGTCTTTCTTCGACAGGATCACGTGTGGGACGTACCTGAAATCGTCGAGCA AGCAAGATACAGGGAAAGGAAAGAGCAAATCTTCCAAGTCAAGGCGAGTCTCCCATGGTTTTCACTTGGTCAAGGGCAAATCAGGTCACGATATGGAAGA CTACCATTTCGCTGAGTATCGCAAATCCAGGAATCATGAGCTTGGTTTGTTCGCAATCTTCGACGGCCATCTCGGCGATAGTGTACCCAGTTATCTCAAG GACAACCTGTTCGACAATATCCTCAACGAGCCCAATTTCTGGAAAGATCCTGGCATAGCGATCAAGAATGCTTACTGCTCAACGGATAATTTCATACTGG AGAATTCTATGCAATTAGGCCCTGGTGGCTCAACCGCCGTCACTGCTATTGTTATTGATGGTAAAGACTTGTGGGTTGCCAACCTTGGTGATTCTAGAGG TGTTGTTTGCGAGTTAGGCGCTGCCAATCAACTTACCGTCGACCACGAACCTCACGTTGAACGCAAGAGGATTGAAAATCAAGGTGGATTCGTCACAACC CTTCCCGGAGATGTGCCAAGAGTGAACGGCCAACTTGCTGTTGCTCGTGCTTTTGGGGATCAAAGTCTTAAGGCACATTTGAGTTCGGAACCTGATATCA GACATGTTCCCATAGACTCCACAATGGACTTTGTTATATTAGCAAGTGATGGCTTGTGGAAGGTGATGAAGAACCAAGAGGCAGTAGATTTGGTGAAGCC TATAAAGGATCCTCAGGCAGCAGCCAAGCGACTGACAACAGAGGCATTGGCTAGAAACAGCAAAGACGACATATCGTGCATAGTGATCCGCTTCGGATGA
AA sequence Show only first row Show all	>Lus10008556 pacid=23161009 polypeptide=Lus10008556 locus=Lus10008556.g ID=Lus10008556.BGIv1.0 annot-version=v1.0 MSRHQATSSSGGGGGGTSFFDRITCGTYLKSSSKQDTGKGKSKSSKSRRVSHGFHLVKGKSGHDMEDYHFAEYRKSRNHELGLFAIFDGHLGDSVPSYLK DNLFDNILNEPNFWKDPGIAIKNAYCSTDNFILENSMQLGPGGSTAVTAIVIDGKDLWVANLGDSRGVVCELGAANQLTVDHEPHVERKRIENQGGFVTT LPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDIRHVPIDSTMDFVILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARNSKDDISCIVIRFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	0	1
					Lus10038520 [exp]	2.0	0.9615
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	2.4	0.9607
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	3.7	0.9496
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	4.5	0.9597
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	4.9	0.9537
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	5.2	0.9459
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	5.3	0.9608
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	6.0	0.9441
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	7.1	0.9256
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	7.1	0.9537

Compare expression of checked genes

Lus10008556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.