Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33340 273 / 5e-89 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 74 / 3e-14 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 74 / 4e-14 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 71 / 4e-13 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 71 / 5e-13 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 69 / 2e-12 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 65 / 3e-11 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 65 / 5e-11 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 56 / 3e-08 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 51 / 1e-06 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032674 [exp] 497 / 1e-177 AT1G33340 252 / 1e-81 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 69 / 2e-12 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 69 / 2e-12 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 65 / 4e-11 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 65 / 6e-11 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 62 / 3e-10 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 61 / 8e-10 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 58 / 7e-09 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 57 / 1e-08 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063700 [exp] 368 / 3e-126 AT1G33340 397 / 1e-137 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 71 / 3e-13 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 70 / 9e-13 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 65 / 3e-11 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 65 / 3e-11 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 65 / 3e-11 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 64 / 6e-11 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 64 / 1e-10 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G103200 [exp] 62 / 3e-10 AT1G03050 126 / 2e-31 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 61 / 9e-10 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10008557 pacid=23161010 polypeptide=Lus10008557 locus=Lus10008557.g ID=Lus10008557.BGIv1.0 annot-version=v1.0 ATGATGGGAGTTGATCTACAAGGCAGGCTCCGGCTAGCTCTCGGCACAGTCAAGGATCATGCGTCCATAGGCAAGGCCATTATTCACATGACCCATCACG ATGCCAAAAAGGGTTTCCCTTATCTCGAAATCGCTCTTGTCCGTGCTACCGGACACCACTATAGCTCCAACATTGACGACAAGCACATGCACGAAATCCT CTTCTTGGCCAACTCCCCTGGCTCCATCCCTTTCCTAGCCGAACGTATCTCTCGCCGCCTCTCCAAGACCAGAGACCGCCTCGTGGCCTTGAAGACGCTC CTCCTGCTCCACCGGCTCCTCCGTGGAGGAAACCGTTGCTTCGAACTCCACCTACGTAGGGCCCATGCATCCGGCCACCTCCAAATCGCCACTAATTGGT TCTCGTCACAACAACAAATTAATAATTCCTCCTCCTCCGACGCTTCTCTTCGCTTCCTTCACAATTATTCTGCTTACCTCCAGGAGAGGATCACATGGGT AATCAATCAATCGGGAAAGCTCGAGCCGCCTTCTTCGTCCATCACGACGACAAACCAAGGCCGTCTCGAATTCGGGTCCCACCACATGGTGTTTCGCAAG CTGCCCAAATGTCAGGCGCTTATAGACAGGGTGCTCGATTGTTTCCCCTTTGCTAATTCCTCGCCTACCTTCGACACGCTCTACGGAGCCACCATGACCA ACATTTTGAAGGAGAGCTTCCAAGTGTACACAACATATGTCGAATGTGTGACGGCTCTAATGAACATGTTCTTCGATCTAACCGATGATGCCAGGGCTCT TGCCTGCCAGATCCTAAGGAGGGCTTCGCGACAAACCCAACTCCTCCACCTAATGTACGATACATGTAAGAAAGTAATCGGGAATGAGAGTTTGGAGTAC CCTCTGGTCGAAATCATTAATACCGAGCATGTCATGGCGTTGGGGCAGCTCCAGCTCTGCACAGATGTCGTTCGTCCCACCTCTGATTCGAATGGAGATC AGTCTCGAGCCCTCACGATTACGAGCCTAGTGAAAGATTGTAATGATCAGAATGATGCTAGTGATACTGATAGTGTCTTCTCGTTCAGTAGCAGCATGGA GACTAAAATAAGTAAAGTATGGGTGGTGTTTGAAGATGATCAATTTAGATAA
AA sequence Show only first row Show all	>Lus10008557 pacid=23161010 polypeptide=Lus10008557 locus=Lus10008557.g ID=Lus10008557.BGIv1.0 annot-version=v1.0 MMGVDLQGRLRLALGTVKDHASIGKAIIHMTHHDAKKGFPYLEIALVRATGHHYSSNIDDKHMHEILFLANSPGSIPFLAERISRRLSKTRDRLVALKTL LLLHRLLRGGNRCFELHLRRAHASGHLQIATNWFSSQQQINNSSSSDASLRFLHNYSAYLQERITWVINQSGKLEPPSSSITTTNQGRLEFGSHHMVFRK LPKCQALIDRVLDCFPFANSSPTFDTLYGATMTNILKESFQVYTTYVECVTALMNMFFDLTDDARALACQILRRASRQTQLLHLMYDTCKKVIGNESLEY PLVEIINTEHVMALGQLQLCTDVVRPTSDSNGDQSRALTITSLVKDCNDQNDASDTDSVFSFSSSMETKISKVWVVFEDDQFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10008557 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	8.2	0.8960
					Lus10039892 [exp]	12.0	0.8872
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	14.1	0.8831
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	17.1	0.8792
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	20.1	0.8785
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	21.1	0.8783
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	22.8	0.8783
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	24.3	0.8783
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	25.3	0.7972
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	25.8	0.8783

Compare expression of checked genes

Lus10008557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.