Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33330 227 / 1e-73 Class I peptide chain release factor (.1) AT2G47020 62 / 1e-10 Peptide chain release factor 1 (.1.2) AT1G56350 60 / 5e-10 Peptide chain release factor 2 (.1) AT5G36170 57 / 5e-09 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT3G62910 49 / 2e-06 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032675 [exp] 199 / 4e-64 AT1G33330 194 / 6e-63 Class I peptide chain release factor (.1) Lus10009980 [exp] 61 / 2e-10 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 61 / 3e-10 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10010922 [exp] 59 / 1e-09 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 59 / 2e-09 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10036446 [exp] 56 / 2e-08 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 52 / 4e-07 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10005944 [exp] 51 / 5e-07 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 50 / 1e-06 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063800 [exp] 240 / 1e-78 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1) Potri.014G114000 [exp] 61 / 4e-10 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.008G075800 [exp] 60 / 6e-10 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.013G009200 [exp] 59 / 2e-09 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.014G133400 [exp] 53 / 1e-07 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.002G188200 [exp] 41 / 0.0007 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.010G181600 [exp] 38 / 0.0007 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10008558 pacid=23161000 polypeptide=Lus10008558 locus=Lus10008558.g ID=Lus10008558.BGIv1.0 annot-version=v1.0 ATGGCATTGGCGGCCCAGTTCGTCCATAGATCGCTTTTCCTCCTCCGGCGAGTAAGAACCGGAGGACCAAACACCAGGCGCTGCCGCAGTCCGCTTATCG CCTCTCATTTCGCTTCTTCTTCTTCTTCAGCTGGTTCACTTCACTACTCTAATCTTCGCTGTTTCTGTTGCAATGACGGCCGACATCCCAATTCTAGGCC TTCACTCATCCACTCGCAACCAACCACAATTCTGAATTCAGCCACAAGCAATTCTACTTCACCGTTTCACCGACGCTGCTTAAATTACAGCTCTACGGTT GCTGATAACGGCGATGAGATTGGGAAGTCGTATCTGGAATCAACGGACGATGAACTAATGCGACAGTGCGATATGTCGACCTACAAGTCTTCCGGCCCCG GCGGTCAGCACCGGAACAAGCGCGAGTCTTCTGTCCGTCTCAAACACTTGCCTACTGGTATCATCGCTCAGGCCGCCGAGGATCGATCGCAGCACAAGAA TCGTGCTTCTGCTTTGAAGCGTTTACGCACACAATTAGCACTCAGAGTGAGAAACCCCGTGGAACTTAATGGATATTCTCCCCCGCCAGAGCTTCTTCAG ATACTTCCTCCTAAGTCCACCATTAGAACCTCTGATTCTGGTTCTCAAATTGGCCCCAACAATCCTAAATTTGCTTTGGGAATGCAAGCTCTCATAGACC TAATCTCTGCTGTTGATGGTTCTGTATCTGATGCTGCAAAACTTTTGGGGTTGAGCACTGGTGGATTATCACGATTAATACTATCAGATGACTCTCTTCG TATGGCTGTGAACGAGTTGAGGAATTCTAAGAAAGAACGGCCCTGTTATGGAGGAAAGGAGAACTCCAACGTGTCTTATGGGGAGATGTGCTTGCAGGGA ATGAAGCCTTTGAAGTAG
AA sequence Show only first row Show all	>Lus10008558 pacid=23161000 polypeptide=Lus10008558 locus=Lus10008558.g ID=Lus10008558.BGIv1.0 annot-version=v1.0 MALAAQFVHRSLFLLRRVRTGGPNTRRCRSPLIASHFASSSSSAGSLHYSNLRCFCCNDGRHPNSRPSLIHSQPTTILNSATSNSTSPFHRRCLNYSSTV ADNGDEIGKSYLESTDDELMRQCDMSTYKSSGPGGQHRNKRESSVRLKHLPTGIIAQAAEDRSQHKNRASALKRLRTQLALRVRNPVELNGYSPPPELLQ ILPPKSTIRTSDSGSQIGPNNPKFALGMQALIDLISAVDGSVSDAAKLLGLSTGGLSRLILSDDSLRMAVNELRNSKKERPCYGGKENSNVSYGEMCLQG MKPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33330			Class I peptide chain release ...		Lus10008558 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	9.3	0.8660
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	13.7	0.8596
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	14.8	0.8435
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	15.6	0.8466
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	17.1	0.8342
AT4G24880			unknown protein		Lus10007295 [exp]	19.2	0.8188
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	22.6	0.8328
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	23.3	0.8443
AT2G01480			O-fucosyltransferase family pr...		Lus10021790 [exp]	26.6	0.8290
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	28.5	0.8296

Compare expression of checked genes

Lus10008558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.