Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56850 123 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032679 [exp] 719 / 0 AT5G56850 134 / 7e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151100 [exp] 170 / 1e-46 AT5G56850 154 / 6e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008560 pacid=23161014 polypeptide=Lus10008560 locus=Lus10008560.g ID=Lus10008560.BGIv1.0 annot-version=v1.0 ATGCCGGGAACCATCCATGTTTCAGTGCTGGAGATCATAGGTGTTCAATCCTTGACGACTTCTTCTCAGATACGCGTCAAAGGGTCTCTTCTGCTCCAAA ATGCAGTTTCCATTGGGAAGAGGGAACATCAAGCTTGGAACAAAGGCGACTTCTCTTTCCCATTAACAACTCTCCGAGACAATGTGATTGTTACACTGGA GGATGCAGATGGCAATGAAATCTCTCATACAAAAGGAATTGATATGAGGTTGCTGATTGGGAAAGGCATTTGGGATGACATTTTCCCTCTGGATGGACTT GGAGGTGGTCACGTACATTTGAAGCTCCAGTTTTTCCTCAGCGAAGATGATCGTCAAAGAATCAGAATCATGAGAGAATCTGCACTGAAAAAGAAACATG ATGAACTTCTCAGCAGCAGAAGCACCAGTATGGCGCACAAGGTCGAAAGCGATCATCATTCTGCTCAGACGAATGCGAGCCCAGTTAAGAATGATATTGA AGGATGTCAAGACACTTCATCCAACCGTGTAAAAGAAGTGAAAAAACAGAGATCAGTAGTCTTCTCAAATGATGGCACCTCCATTGAAACCATTTCAAAG CAGCAAAAAGCATTGGAGAAAGCTCATGGCAGTGTGAGGAACATGATAAGTGCCTTTGAAAGTAGCGGCCATCAGGACATGAGGAGCAAAGTAATAAGAC AACAAATAACAAAGTCTCAGTCAGTCAACAACTTAGTCAATGTTAACACCTCGAAATCCAAGATGATGCAGAAAGTTAGATCAACAGACTCCCTGTCGGG ACAGCTCAGCAGTTGCCTACCTCAGCCTGATAACATCCATATGAAAGAAGAGGAAACAGGAAATCAGGACATGGAAAGTATAGTAAGACCAGAAATGACC AAGTCTCAGTCAGGCTTAAGCCTAAGATCCAAAATGCAGAATGTTACTGGAGCCAACGAGACCGAAAAAATAAAGTTTCTCGAGGATTTGGATAGAAGGA AGAGTGCAAATGAGAGGGCTTCTTTCTCAGGAAGTATCCATGATCAGCAAACCAGTGGTGATGTGATCACTAGAAAAAGTGACAGTACAATTGGAAGACG AGAAATGTACAGTTCAGGAGATGATCAACGATCGCCAGAGTGTTCTGGCGCATGGATATTTGCTGATCAAGGCAGGCGCTTGTGTGTAACAACTGCTGGC AAACAGGTACTCAACATAATCGGTGGGTTCTGTTGCGAAAGGGAAAGGATATCAGGGCCAGGAAACATGGAAAATAGAATAGAGGTACCATCGATCTTTT TCACAGTCTGGTCATTTTAG
AA sequence Show only first row Show all	>Lus10008560 pacid=23161014 polypeptide=Lus10008560 locus=Lus10008560.g ID=Lus10008560.BGIv1.0 annot-version=v1.0 MPGTIHVSVLEIIGVQSLTTSSQIRVKGSLLLQNAVSIGKREHQAWNKGDFSFPLTTLRDNVIVTLEDADGNEISHTKGIDMRLLIGKGIWDDIFPLDGL GGGHVHLKLQFFLSEDDRQRIRIMRESALKKKHDELLSSRSTSMAHKVESDHHSAQTNASPVKNDIEGCQDTSSNRVKEVKKQRSVVFSNDGTSIETISK QQKALEKAHGSVRNMISAFESSGHQDMRSKVIRQQITKSQSVNNLVNVNTSKSKMMQKVRSTDSLSGQLSSCLPQPDNIHMKEEETGNQDMESIVRPEMT KSQSGLSLRSKMQNVTGANETEKIKFLEDLDRRKSANERASFSGSIHDQQTSGDVITRKSDSTIGRREMYSSGDDQRSPECSGAWIFADQGRRLCVTTAG KQVLNIIGGFCCERERISGPGNMENRIEVPSIFFTVWSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56850			unknown protein		Lus10008560 [exp]	0	1
AT5G09820			Plastid-lipid associated prote...		Lus10020860 [exp]	1.0	0.9453
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	1.4	0.9406
AT5G09820			Plastid-lipid associated prote...		Lus10033514 [exp]	2.0	0.9373
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	4.9	0.9037
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019082 [exp]	5.5	0.9104
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008210 [exp]	5.7	0.9102
AT5G56850			unknown protein		Lus10032679 [exp]	7.5	0.9106
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	7.9	0.9374
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	8.1	0.9114
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	8.5	0.9118

Compare expression of checked genes

Lus10008560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.