Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19560 635 / 0 ESSP1, AtTHP1, EER5 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032680 [exp] 767 / 0 AT2G19560 683 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221700 [exp] 691 / 0 AT2G19560 663 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10008561 pacid=23160996 polypeptide=Lus10008561 locus=Lus10008561.g ID=Lus10008561.BGIv1.0 annot-version=v1.0 ATGGCTTACCTGAGCATGGGAGAATCGCACAGAAGAATCACCGACTATCTTAACAGGTTTTCCGACGCCATCTCCTACCAGGGTGGAGATACTCTGGCAC AGCTGTTCTCCGTCTCTTCCAACTCCCCCTCTCTCCTCTCCCTCGCCGACGCTCTCAACGTTTTCAAGGATGCTAATAGACTGATAAAGCAATCGGACAA ATTCTCGCAATTTGGGGAAGTAGTGGCTCCATTTTTCCGTGCTCTGCAAAGCTATAGAACCGGCAATTTGGTTGATGCTTACCAAGCCTTCGAGAAATCT GCCAATGCCTTTATACAGGAGTTCCGGAACTGGGAATCGGCTTGGGCTTTGGAGACACTTTATGTCATTGCTTATGAGATAAGGGTTCTTGCAGAGAGGG CTGATAGAGAGCTCGCTTCGAATGGAAAATCTCCGGAGAAGTTGAAGGGAGCTGGTTCATTTCTCATGAAAGTTTTTGGTGTTCTTGCTGGGAAAGGTCC AAAGCGTGTAGGAGCGCTATATGTAACTTGTCAGTTGTTCAAAGTGTACTTTAAGCTTGGCACAGTTCACCTTTGCCGTAGTGTGATAAGAAGTATTGAA ACTGCCAGAATATTTGATTTTGAGGAGTTTCCAACTAGGGACAAGGTCACTTACATGTACTACACTGGCCGTTTAGAAGTTCTCAATGAAAATTTCCCAG CTGCTGATCAAAAGTTGTCATATGCCTTGACACACTGCAGTCTCAGCAAAGAAGCAAATATAAGGATGATATTGAAGTATTTGATACCAGTGAAGCTTTC AATAGGCATTTTACCAAAGAGACAGCTCCTAGAGAACTATAACTTGGTCGAGTACAGCAATGTTGTTGAAGCCCTAAAGCGAGGTGATCTAAGACTTCTT CGAAGTGCTCTTCAAGAGAATGAAGATCAATTCCTCAGATCAGGTGTTTATCTTGTCCTGGAGAAGCTAGAACTTCAAGTTTATCAAAGATTACTAAAGA AGATCTACATCATCCAAAAGCAAAAGGACCAAAGCAAAGGTCACCAACTGAAGTTGGAGGTGATTGTTAAAGCATTAAAGTGGCTCGAGATTGCAATGGA TATCGACGAGGTGGAATGCATAGTGGCAATATTGATATACAAGAACCTAATGAAAGGTTACTTTGCCCACAAAAGCAAAGTTGTAGTGTTGAGCAAGCAA GACCCTTTCCCTAAATTAGATGGCAAGCCGGTTGGTTAA
AA sequence Show only first row Show all	>Lus10008561 pacid=23160996 polypeptide=Lus10008561 locus=Lus10008561.g ID=Lus10008561.BGIv1.0 annot-version=v1.0 MAYLSMGESHRRITDYLNRFSDAISYQGGDTLAQLFSVSSNSPSLLSLADALNVFKDANRLIKQSDKFSQFGEVVAPFFRALQSYRTGNLVDAYQAFEKS ANAFIQEFRNWESAWALETLYVIAYEIRVLAERADRELASNGKSPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLFKVYFKLGTVHLCRSVIRSIE TARIFDFEEFPTRDKVTYMYYTGRLEVLNENFPAADQKLSYALTHCSLSKEANIRMILKYLIPVKLSIGILPKRQLLENYNLVEYSNVVEALKRGDLRLL RSALQENEDQFLRSGVYLVLEKLELQVYQRLLKKIYIIQKQKDQSKGHQLKLEVIVKALKWLEIAMDIDEVECIVAILIYKNLMKGYFAHKSKVVVLSKQ DPFPKLDGKPVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10008561 [exp]	0	1
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	2.4	0.9112
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	3.7	0.9082
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	8.5	0.9075
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	10.0	0.9024
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	17.4	0.8950
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	17.7	0.8950
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	20.0	0.8967
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	21.4	0.8844
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	22.4	0.8788
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	24.5	0.8874

Compare expression of checked genes

Lus10008561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.