Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 696 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29690 547 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29700 525 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29710 183 / 5e-56 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032681 [exp] 933 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10034660 [exp] 587 / 0 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10007981 [exp] 534 / 0 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10017872 [exp] 249 / 6e-81 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 210 / 3e-66 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150900 [exp] 719 / 0 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.018G066600 [exp] 704 / 0 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10008562 pacid=23160997 polypeptide=Lus10008562 locus=Lus10008562.g ID=Lus10008562.BGIv1.0 annot-version=v1.0 ATGGGTACCGAATCGGCTTTAACCGCAACAAAGCCGACCCCGATTCCAACTCATGAAGAAGACCCGCCATCAAACCAATCCGCCGCTCTCCTCGCCGCCG AAAATCCATCCTCTCCGCCCCAGAAGCCCACCACCACCATCATCTTCATCGCTCTCCTCTTAGTCACTTGCGTCGCTCTCTCCGCAGCCTCCGCCTTCGC TTTCCTCTTCTTCTCCGCCAAATCCACCCCTCCGATTTCCCACGACGACAAGACGGCGCGTCCTCTAACGAAATTGGATCACCCGGTCGTTTTGGTCATC TCCTCCGACGGGTTCCGGTTCGGGTACCAGCACAAAACCCCGACTCCCAACATAGCCCGACTCATCGCCAATGGCACGGAGGCCGAAACCGGTTTGATTC CTGTATTCCCTACTCTAACCTTCCCGAATCATTATTCGATCGTCACAGGGCTTTACCCTGCTTACCATGGAATCATTAACAACAGGTTTACTGATCCTAG AACTGGAGATGTGTTTACTATGGCCAGCCACGATCCGAGATGGTGGCTGGGCGAGCCAATGTGGGAGACTCTGGCTAATCATGGTTTGAAAGCCGCTACT TACTTCTGGCCTGGATCTGAGGTGATCAAGGGGTCTTGGAACTGCCCTAAAGGGTTTTGTATGCAGTATGACGGGTCGGTTCCATTCGAGGATAGAGTTG ATACAATATTGAGTTACTTTGATCTGCCTAGCAGTGAGATTCCTGTGTTTATGACGCTGTATTTTGAGGATCCTGATCATCAAGGTCACCAAGTTGGTCC AGATGATCCTCAGATTACTGAAGCCGTTGCTCACATTGACAGTTTGATAGGGAGGTTGATTGATGGATTGGAGAAGAGAGGGGTTTTCGAAGATGTTACT GTTATCATGTTGGGTGATCATGGCATGGTTGGCACTTGCGATAAGAAACTCATCATCCTTGATGATTTAGCAGAATGGGTTGAGATTCCGAAAGAATGGG TGCCTTACTACACTCCAGTGCTTTCGATTCGACCGCCTACTGATGTTAATCTATCTGACGTGGTTACGAAGATGAACCAAGGATTGGAGTCGGGGAAAGT TGAGAACGGGAAGTACCTGAAAATGTATCTTAAGGAGGATCTGCCTAGTAGGCTGCATTACTCGGAGAGCGAGAGGATTCCTCCTATAATCGGGATGCTT GGAGAGGGTTATAAGGTGGAGCAGACGAAAACGAAGAATGGGCAAGAGTGTGGTGGAGCTCATGGTTATGACAATGCGTATTTCTCGATGAGGACCATCT TTGTCGGCCACGGTCCTCAGTTTGGGAAAGGAGTGAAAGTGCCGTCATTTGAGAATATACAGATATACAATGTGATTGCCTCGATTTTGAATGTCGAGGG TGCCCCGAATAATGGGTCTTCGTCGTTTCCTCAGTCTATTCTTTTGCGGAAGCCATAG
AA sequence Show only first row Show all	>Lus10008562 pacid=23160997 polypeptide=Lus10008562 locus=Lus10008562.g ID=Lus10008562.BGIv1.0 annot-version=v1.0 MGTESALTATKPTPIPTHEEDPPSNQSAALLAAENPSSPPQKPTTTIIFIALLLVTCVALSAASAFAFLFFSAKSTPPISHDDKTARPLTKLDHPVVLVI SSDGFRFGYQHKTPTPNIARLIANGTEAETGLIPVFPTLTFPNHYSIVTGLYPAYHGIINNRFTDPRTGDVFTMASHDPRWWLGEPMWETLANHGLKAAT YFWPGSEVIKGSWNCPKGFCMQYDGSVPFEDRVDTILSYFDLPSSEIPVFMTLYFEDPDHQGHQVGPDDPQITEAVAHIDSLIGRLIDGLEKRGVFEDVT VIMLGDHGMVGTCDKKLIILDDLAEWVEIPKEWVPYYTPVLSIRPPTDVNLSDVVTKMNQGLESGKVENGKYLKMYLKEDLPSRLHYSESERIPPIIGML GEGYKVEQTKTKNGQECGGAHGYDNAYFSMRTIFVGHGPQFGKGVKVPSFENIQIYNVIASILNVEGAPNNGSSSFPQSILLRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	0	1
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	1.0	0.9166
AT4G02040			unknown protein		Lus10019069 [exp]	2.4	0.8809
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	3.7	0.8720
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	5.0	0.8770
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	6.0	0.8577
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	6.2	0.8799
AT4G19950			unknown protein		Lus10038358 [exp]	6.5	0.8755
					Lus10031757 [exp]	6.8	0.8153
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	6.9	0.8788
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	7.5	0.8656

Compare expression of checked genes

Lus10008562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.