Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19580 363 / 8e-128 TET2 tetraspanin2 (.1) AT5G46700 230 / 4e-75 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G45600 202 / 4e-64 TET3 tetraspanin3 (.1) AT2G23810 195 / 2e-61 TET8 tetraspanin8 (.1) AT4G28050 190 / 2e-59 TET7 tetraspanin7 (.1) AT4G30430 174 / 4e-53 TET9 tetraspanin9 (.1) AT5G60220 169 / 7e-51 TET4 tetraspanin4 (.1) AT1G18520 161 / 2e-48 TET11 tetraspanin11 (.1) AT1G63260 148 / 2e-43 TET10 tetraspanin10 (.1.2.3) AT3G12090 146 / 2e-42 TET6 tetraspanin6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007998 [exp] 358 / 1e-125 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10040551 [exp] 351 / 6e-123 AT2G19580 364 / 3e-128 tetraspanin2 (.1) Lus10001668 [exp] 275 / 1e-92 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10017336 [exp] 275 / 1e-92 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10023216 [exp] 221 / 2e-71 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 218 / 2e-70 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 215 / 4e-69 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 210 / 2e-67 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 203 / 2e-64 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150400 [exp] 409 / 1e-145 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.003G093000 [exp] 279 / 2e-94 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 261 / 3e-87 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G177900 [exp] 214 / 7e-69 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 201 / 7e-64 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.009G015100 [exp] 197 / 2e-62 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.010G220300 [exp] 171 / 7e-52 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 169 / 2e-51 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.001G107200 [exp] 161 / 3e-48 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3) Potri.015G055700 [exp] 157 / 7e-47 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10008563 pacid=23161021 polypeptide=Lus10008563 locus=Lus10008563.g ID=Lus10008563.BGIv1.0 annot-version=v1.0 ATGGGGCTATCCAACAACCTAACCGCAATTCTAAACTTCATAGCCTTCCTCTGCTCAATCCCAATCATCGCATCCGGAATCTGGCTAGCATCCCAGCCGG ACAACGAGTGCATCCACTTCATCCGATGGCCTATCGTCCTCCTCGGAGCCTTAATCCTCGTCGTCTCCCTCACCGGCTTCGTCGGTGCTTACTGGTACAA AGAAACCTTGCTCGCCTTCTACCTCTGCTGTATGGCCATCCTCATCACCCTCCTCCTCATCCTCATCGTCTTCGCCTTTGTCGTCACTCGCCCGGACGGC ACATACCAAGTCCCCGGCCGAGGATATAAGGAGTACAGAATCGAAGGGTTTTCGTCCTGGTTGAGGAATCATGTGGTTAATTCCAAAAATTGGGGCGCAA TTCGTGCCTGCCTGGCCGAGACGGATGTTTGTACCAAATTGTCTCAGAATTACATCTCTGCCGAGCAGTTCTTCGCCGCTCGCATATCGCCTCTCCAGTC AGGGTGCTGCAAGCCTCCGACTGTATGCGGGTACAATTACGTGAACCCAACACTGTGGGTGAACCCGGCGAACCCAACGGCGGATCCGGACTGCTCTATG TGGAGCAACGACCAGACTCAGGTGTGCTTCAACTGTAACTCATGCAAAGGAGGTCTGCTGGGGAACCTCAGGAAAGAGTGGAGAAAAGTGAACACCATCC TCATTGTAGCAGTGGTAGTCCTCATCTTCGTCTATGTTATTGCTTGTAGCGCTTTCAAGAATGCCCAAACTGAAGACCTTTTCCGCCGTTACAAACAGGG TTGGGTCTGA
AA sequence Show only first row Show all	>Lus10008563 pacid=23161021 polypeptide=Lus10008563 locus=Lus10008563.g ID=Lus10008563.BGIv1.0 annot-version=v1.0 MGLSNNLTAILNFIAFLCSIPIIASGIWLASQPDNECIHFIRWPIVLLGALILVVSLTGFVGAYWYKETLLAFYLCCMAILITLLLILIVFAFVVTRPDG TYQVPGRGYKEYRIEGFSSWLRNHVVNSKNWGAIRACLAETDVCTKLSQNYISAEQFFAARISPLQSGCCKPPTVCGYNYVNPTLWVNPANPTADPDCSM WSNDQTQVCFNCNSCKGGLLGNLRKEWRKVNTILIVAVVVLIFVYVIACSAFKNAQTEDLFRRYKQGWV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	0	1
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10014239 [exp]	1.4	0.9451
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	3.0	0.9244
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	3.0	0.9483
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	3.5	0.9445
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	4.0	0.9249
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	6.2	0.9174
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	6.6	0.9197
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10028426 [exp]	6.9	0.9192
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	8.9	0.8869
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	10.0	0.9374

Compare expression of checked genes

Lus10008563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.