Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19590 409 / 4e-144 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G12010 290 / 2e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G05010 286 / 1e-95 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G62380 285 / 2e-95 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G77330 249 / 1e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 167 / 4e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 164 / 7e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 160 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 157 / 4e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 156 / 8e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032683 [exp] 336 / 1e-116 AT2G19590 232 / 5e-80 ACC oxidase 1 (.1) Lus10035334 [exp] 305 / 4e-103 AT1G05010 495 / 6e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10015153 [exp] 303 / 2e-102 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 303 / 2e-102 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10029992 [exp] 301 / 1e-101 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10000857 [exp] 264 / 6e-87 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 263 / 7e-87 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 166 / 1e-48 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 166 / 2e-48 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151600 [exp] 431 / 5e-153 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.004G003000 [exp] 308 / 2e-104 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 304 / 7e-103 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 298 / 9e-101 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.014G159000 [exp] 296 / 6e-100 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.005G182700 [exp] 270 / 2e-89 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 269 / 3e-89 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 181 / 3e-54 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 176 / 2e-52 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 174 / 2e-51 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008564 pacid=23161016 polypeptide=Lus10008564 locus=Lus10008564.g ID=Lus10008564.BGIv1.0 annot-version=v1.0 ATGGAGATTCCCACAATTGATTTCAGTGAGTTTGAAGGAGATAACAGGACCAAAACCATGGCCATTCTGCACGATGCTTGCCAGAATTGGGGTTTCTTTC AGGTTCAGAACCATGGGATCAGCAGCAAGTTGATGGAGAAAGTGAAGCAGCTGGTCGATCAATACTACGAGGAAAACTTGAAAGAGTGCTTTTATCAGTC CGAGACAGCCAAAAAGCTGAACGACATAGAAAATCCAACATCTGATGTGGATTGGGAAAGTAGCTTCTTCATCCGCCATCGCCCATCCTCCAACATTCAC CAAATCCCCAACTTACCTCAAGGTTTCAGCGAAACCATTGATGAGTACATAGCTGACCTAATCAAACTGGCCGAAAAGCTCTCGAATCTGATGTGCGAGA ATCTGGGAGTAGACGAAAACTTCATAAAGGACTCATTCGCCGGGAAAAAGGAAGCCGGCGGGTCGAAAAAGGAAGCCGGCGGTCCTGCAGTAGGAACAAA AGTGGCGAAATACCCAAAATGCCCCGAGCCAGATCTCGTCAGAGGACTTCGAGAGCACACAGACGCCGGCGGAATCATACTGCTTCTTCAGGACGATCAG GTCCCCGGGCTGGAGTTCCTGAAAGATGGGAAATGGGTACAGATTCCTCCGTCGAAGAACAACACGATATTCGTCAACACTGGGGATCAGGTGGAGGTGT TGAGTAATGGAAGATACAAAAGCACTCTGCATCGAGTCATGGCTGATAAGGACGGGAGCAGGCTTTCGATTGCCACTTTCTATAATCCAGCTCCTGATGC TGTCATTGTTTCGCCGCCGGCGGGGGATTTGACTGAGATGATGATGTATCCGCAGGCGTACACTTTTGGGGATTATCTCCAGCTCTACTCGGCTACTAAG TTTGCTGACAAAGGAGACAGATTTGAGACCATGAAGAAAAACTTACTAATGGCTGATGATTGA
AA sequence Show only first row Show all	>Lus10008564 pacid=23161016 polypeptide=Lus10008564 locus=Lus10008564.g ID=Lus10008564.BGIv1.0 annot-version=v1.0 MEIPTIDFSEFEGDNRTKTMAILHDACQNWGFFQVQNHGISSKLMEKVKQLVDQYYEENLKECFYQSETAKKLNDIENPTSDVDWESSFFIRHRPSSNIH QIPNLPQGFSETIDEYIADLIKLAEKLSNLMCENLGVDENFIKDSFAGKKEAGGSKKEAGGPAVGTKVAKYPKCPEPDLVRGLREHTDAGGIILLLQDDQ VPGLEFLKDGKWVQIPPSKNNTIFVNTGDQVEVLSNGRYKSTLHRVMADKDGSRLSIATFYNPAPDAVIVSPPAGDLTEMMMYPQAYTFGDYLQLYSATK FADKGDRFETMKKNLLMADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	0	1
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	1.0	0.9332
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	2.0	0.9326
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	3.6	0.8857
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	4.0	0.8833
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	4.5	0.9121
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	7.5	0.9131
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	10.9	0.8361
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10006989 [exp]	13.9	0.7966
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	15.7	0.9149
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	15.7	0.7851

Compare expression of checked genes

Lus10008564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.