Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29540 405 / 3e-141 AtLpxA bacterial transferase hexapeptide repeat-containing protein (.1.2) AT4G05210 42 / 0.0004 AtLpxD1 lipid X D1, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032684 [exp] 617 / 0 AT4G29540 468 / 8e-167 bacterial transferase hexapeptide repeat-containing protein (.1.2) Lus10020067 [exp] 43 / 0.0002 AT4G21220 342 / 3e-118 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150200 [exp] 432 / 1e-151 AT4G29540 396 / 3e-138 bacterial transferase hexapeptide repeat-containing protein (.1.2) Potri.004G039400 [exp] 44 / 0.0001 AT4G21220 359 / 2e-125 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10008565 pacid=23160999 polypeptide=Lus10008565 locus=Lus10008565.g ID=Lus10008565.BGIv1.0 annot-version=v1.0 ATGAATTCGCTCTATAGAATCCGCCGCCGGCCATTTCCTTCTCTTGTCATCCCCGACTCTCTCCGACGATTCTCCTCATCCACTCTCACTTGTCGTACGG AGGAGGTCTCGCCGACTGCCAATCATAGTATCGTTCATCCTTGTGCGGTGATTCACCCCAACGCACTGATTGGCGAGGGAGTTTCTATCGGTCCATTTTG CACTGTTGGATCCTCTGTCAAGCTTGGAAATGGCTGCCATTTGTATCCGGGTAGTCACGTTTTTGGAGATACTGACATCGGGGAGCGTTGTGTTTTGATG GCTGGTGCTGTTGTTGGCGAAGATCTTCCCGGAAGAACAATACTGGGGGAAAATAACATTGTTGGTCATCATGCTGTGATAGGTGTCAAGTGCCAAGACA TGAAATACAAGAACTCTAAATGTATCTTAGACATTGAGGACGAGATTCTGTTTATTAACTTTACAGTGGGACTTCCTGAATTGGGTTGTACTCCTAAGTG TTCGTTTTATTTTCCTTCCACCTTAAGACTTGAATACTGGTCTCTGCAACTTGGGAAAGAATGTTTTCTTCACATTGGAGACAATAACGAGATCAGAGAG CATACATCAATTCACAGGTCTTCGAAGTCAGATAGTAAGACGGTCATTGGTGACAACAATCTGATTATGGGTTCTTGCCATATTGCCCATGATTGCAACA TTGGAAACCATAATATTTTTGCTAATAATACTCTTCTTGCTGGACATGTTGTCGTGGAAGATTATGCCCACACGGCTGGTGCAATCGTTGTTCACCAATT TTGTCGCATTGGTTCTTACGCGTTCGTAGGTGGTGGATCAGTGGTTTCACAAGATGTCCCAAAGTACACTATGGTGGCTGGAGAAAGGGCTGAACTACGT GGTCTGAACTTGGAGGGTCTTCGTCGTCGCGGATTCACATCAACAGAGATTAAAAGCTTGAGAGCAGCTTACAGAAAGATATTCATGCCAGCTTCTGGAA ATAGTATGAGCTTTGAAGAACGCCTTGCCATGCTGTGGGACATGAATTTGCAGGAGAAGGATGAAGAACTGAGTAAGGTTTCTGCTGTACGTTCCATGAT ACGATCTCTGCACGATTCTTTCGGAGAAAGCCGCAGAGGAATCTGCAAATTCAGACAGTGGACCAGCTAG
AA sequence Show only first row Show all	>Lus10008565 pacid=23160999 polypeptide=Lus10008565 locus=Lus10008565.g ID=Lus10008565.BGIv1.0 annot-version=v1.0 MNSLYRIRRRPFPSLVIPDSLRRFSSSTLTCRTEEVSPTANHSIVHPCAVIHPNALIGEGVSIGPFCTVGSSVKLGNGCHLYPGSHVFGDTDIGERCVLM AGAVVGEDLPGRTILGENNIVGHHAVIGVKCQDMKYKNSKCILDIEDEILFINFTVGLPELGCTPKCSFYFPSTLRLEYWSLQLGKECFLHIGDNNEIRE HTSIHRSSKSDSKTVIGDNNLIMGSCHIAHDCNIGNHNIFANNTLLAGHVVVEDYAHTAGAIVVHQFCRIGSYAFVGGGSVVSQDVPKYTMVAGERAELR GLNLEGLRRRGFTSTEIKSLRAAYRKIFMPASGNSMSFEERLAMLWDMNLQEKDEELSKVSAVRSMIRSLHDSFGESRRGICKFRQWTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10008565 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	9.3	0.8431
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	9.5	0.8131
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	10.1	0.7964
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	11.0	0.8251
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	11.2	0.7930
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	17.0	0.7883
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	17.7	0.8071
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	19.2	0.7966
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	19.8	0.8243
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	20.7	0.8010

Compare expression of checked genes

Lus10008565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.