Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 519 / 6e-177 Protein kinase superfamily protein (.1) AT3G13690 519 / 8e-176 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 514 / 5e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G38560 296 / 5e-91 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 294 / 3e-89 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G70460 288 / 1e-87 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G68690 286 / 6e-87 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G23540 283 / 1e-85 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 278 / 9e-84 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G52290 272 / 1e-83 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006148 [exp] 513 / 5e-174 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 504 / 5e-169 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 361 / 1e-113 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 353 / 6e-111 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 352 / 8e-111 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 301 / 6e-94 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10003066 [exp] 292 / 1e-88 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10034082 [exp] 291 / 2e-88 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10013014 [exp] 281 / 7e-88 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200000 [exp] 516 / 3e-175 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 513 / 6e-174 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 503 / 1e-170 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 379 / 4e-122 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 374 / 4e-120 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G189850 [exp] 322 / 2e-100 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.005G185500 [exp] 311 / 2e-97 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 292 / 1e-88 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 287 / 2e-87 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 282 / 2e-86 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008566 pacid=23161011 polypeptide=Lus10008566 locus=Lus10008566.g ID=Lus10008566.BGIv1.0 annot-version=v1.0 ATGAGCCGGAGAAGGTGGTCGTCGACTGTTGGTTCAACCGCGGAGAAAGGGTTGGGGAAAATGGTGGTGGTGGCCGTTAAACCAGCCAGGGACAAGATTT CGACGACTGCTCTGCTTTGGGCGTTGACTAACGTTGTTCAGCCTGGAGACTCTGTCAACCTCTTGCTTATCCTCCCTCATCTTCATTCCTTAGGTAAGAT CATATGGGCATTCGCAAGATTTAGAGGTGAATGTGCTAACAAGTTTGATCAAAGAGATGAGATATCACATCTTTGCTCCCAAATGATGATTCAACTCCGT CAAGTTTACGACTTTGATAAGATACGATTCAGTGTCAAGGTTGTTTCAGAGTCAACCACTGGATTCGTGGCTGCTGAAGCCAAGAACACCGATCCCAACT GGGTGATTTTGGACAAGCATTTGAAACATGAAAAGCAATGCTGCATGGAAAAGCTAGACTGCAATCTAGTAGTCATGAAGAAGAAATCTCGTCCAGAAGT CCTCCGCTTGAATTTGAACGCATCATCATTCAAGCTGCAGCTACCACCTCAAGTAATTTCTTTCCCATGGCCGCTTAGTGGTGTCGATGATGATGGCCCC GCTCCTCCAACGTACTTCGACTGCAGAGACGACAATAACAATTCATTAATGGCACCATCCGTTACTCCAGAAAGCACTCCTGAGCAAGAAGTATTCTCCC TCACAACCACCATAGATTTCGCCTCGTCTATATCAAGTTCAGAACCAGCAGGAGCTTCACCGTTTCTTGTACATGACTATTCCGGAAGCATGCGGAAAAA CCTTTTATTCGTTTCTGACGATCCAGAATCCGACTCAGAATCTGAATTTCCGTCCTTCAACTCGATGAGCAAAAGCGTGAGAGAAGCGATTTCACTACCG AGTCGAAAAGTTCCCCCTACCCATGGATCCCCTGCATTGTGTACAGTGTGTCAACACAAAGCTCCTGGATTTGGAAACCCTCCAAAGTGGTTTACTTATG GGGAGCTTGAAGTTGCCACAAGGGGATTTTCCAAGGAGAATTTCTTGGCTGAAGGTGGGTTTGGTTCTGTTTACCGGGGTGTGTTACCAGATGGGCAGGT TGTTGCTGTGAAGCAACACAAATCGGTTAGTTCTCAAGGCGATGTAGAGTTCTGCTCGGAGGTTGAGGTTTTGAGCTGTGCACAACATAGGAATGTGGTG ATGTTGATTGGGTTTTGCGTCGAGAATGCCAGGAGGCTTCTGGTTTATGAATATGTTTGCAATGGCTCTCTTGATTCGCATCTTTTCGCATTAGACAGAG ATGCATTGAGTTGGCATGCAAGGCAAAGAATTGCAGTTGGAGCAGCGAGAGGATTGAGATACCTTCATGAAGAATGCAGAGTTGGCTGCATCGTCCATCG TGATATGAGGCCAAACAACATCCTTCTCACCCATGATTTTGAGCCTCTGGTTGGAGATTTTGGATTAGCAAGGTGGCAGCCACAAGCAGACTTGGGAGTT AGCACAAGAGTTATAGGAACATTTGGATATTTGGCTCCAGAGTATGTTCAAAAGGGGCAAATAACTGAGAAAGCTGATGTGTACGCATTTGGGGTAGTGC TACTGGAACTCATCACAGGAAGAAAGGCTATCGACGTCCAAAAGCCCAAAGGACAGCAATGCCTCACCGAATGGGTAAATGCGCCATTAATTGTTCAGTA CTGCTACTTTCTTCTACCTGCATGCATTGCGTTGATCGAATTAAGAAACCTCGTACAGGCCCGTCCTCTGTTGGAAAAGAAGACGGTTGATGATGAAGTG GTTGATCCGCGGTTAAGCAAGCTCGACTTGGTGGTGCAACAGTTGAGTAACATGATGATGTGTGCATCTTTGTGTCTCAAGCGTGATCCTGATTTAAGGC CTCGTATGTCTCAGGTACTACGGATTTTGGAAGGTGACTTGTTCATGAACTCGCCCACCCAAAATCAAACAACGTAG
AA sequence Show only first row Show all	>Lus10008566 pacid=23161011 polypeptide=Lus10008566 locus=Lus10008566.g ID=Lus10008566.BGIv1.0 annot-version=v1.0 MSRRRWSSTVGSTAEKGLGKMVVVAVKPARDKISTTALLWALTNVVQPGDSVNLLLILPHLHSLGKIIWAFARFRGECANKFDQRDEISHLCSQMMIQLR QVYDFDKIRFSVKVVSESTTGFVAAEAKNTDPNWVILDKHLKHEKQCCMEKLDCNLVVMKKKSRPEVLRLNLNASSFKLQLPPQVISFPWPLSGVDDDGP APPTYFDCRDDNNNSLMAPSVTPESTPEQEVFSLTTTIDFASSISSSEPAGASPFLVHDYSGSMRKNLLFVSDDPESDSESEFPSFNSMSKSVREAISLP SRKVPPTHGSPALCTVCQHKAPGFGNPPKWFTYGELEVATRGFSKENFLAEGGFGSVYRGVLPDGQVVAVKQHKSVSSQGDVEFCSEVEVLSCAQHRNVV MLIGFCVENARRLLVYEYVCNGSLDSHLFALDRDALSWHARQRIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEPLVGDFGLARWQPQADLGV STRVIGTFGYLAPEYVQKGQITEKADVYAFGVVLLELITGRKAIDVQKPKGQQCLTEWVNAPLIVQYCYFLLPACIALIELRNLVQARPLLEKKTVDDEV VDPRLSKLDLVVQQLSNMMMCASLCLKRDPDLRPRMSQVLRILEGDLFMNSPTQNQTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55200			Protein kinase protein with ad...		Lus10008566 [exp]	0	1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10040725 [exp]	17.0	0.8039
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	22.2	0.8475
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	23.7	0.8107
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	59.7	0.7938
AT4G30900			DNAse I-like superfamily prote...		Lus10036262 [exp]	61.0	0.8018
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	93.3	0.7657
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	103.9	0.7978
AT5G23760			Copper transport protein famil...		Lus10001485 [exp]	109.2	0.7966
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	185.8	0.7777
AT1G03970	bZIP	GBF4	G-box binding factor 4 (.1)		Lus10042810 [exp]	199.0	0.7630

Compare expression of checked genes

Lus10008566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.