Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56760 377 / 3e-132 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT1G55920 295 / 1e-99 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT3G13110 291 / 4e-97 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT4G35640 240 / 7e-78 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 224 / 6e-72 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032686 [exp] 470 / 4e-169 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10016603 [exp] 290 / 1e-97 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10040503 [exp] 287 / 2e-96 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10010679 [exp] 226 / 2e-72 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10007424 [exp] 140 / 5e-39 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147000 [exp] 403 / 1e-142 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.013G109500 [exp] 398 / 1e-140 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.001G365500 [exp] 303 / 9e-103 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.005G099700 [exp] 111 / 3e-29 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 108 / 5e-29 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal CL0536 [flax] [poplar] HEXAPEP PF00132 [flax] [poplar] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Lus10008567 pacid=23161002 polypeptide=Lus10008567 locus=Lus10008567.g ID=Lus10008567.BGIv1.0 annot-version=v1.0 ATGCCGACGGGGGAACTCCTCCCTCCCTCGCAGCAACCGCCGATGCATCCCACTGCCGCCGAAGACGAGTCCTGGCTATGGGCCCAGATCAAAGCCGAGG CGCGACGTGACGCGGAAGCGGAGCCAGCTCTAGCAAGCTACCTCTACTCCACCATTCTCTCCCATTCTTCCCTTGAGCGATCCCTCGCCTTCCACCTCGG CAACAAACTCTCTTCCCCTACTCTCCTTTCCACTCTCCTCTACGACCTCTTCCTCAACACCTTCTCCTCCGACGCTTCCCTTTGCGCTGCCGCCGTTGCC GACCTACGCGCCGCCCGCATACGTGATCCCTCTTGCGTCTCCTTCTCCCATTGCCTCCTCAATTACAAGGGCTTCTTGGCTTGTCAGGCGCATCGTGTGG CTCACAAGCTATGGATGCAATCGCGGCGGCCTTTAGCTCTGGCGCTGCAGTCCCGAGTGTCGGACGTTTTTGCCGTCGACATTCATCCGGCCGCGAAGAT CGGGAAGGGAGTTCTGTTCGACCACGCGACCGGCGTGGTGGTCGGCGAAACGGCGGTGATAGGCAACAACGTGTCGATCCTGCACCACGTGACGCTAGGA GGGACCGGGAAAGCGTGCGGCGATCGTCACCCGAAAATCGGCGACGGAGTTCTGATTGGCGCGGGGGCGACGATCCTGGGGAACGTGAAGATAGGGGAAG GAGCTAAGATTGGTGCGGGATCGGTGGTGTTGATCAACGTACCAGCAAGGTCAACAGCAGTTGGGAATCCGGCGAGGCTGGTTGGAAGGAAGGAGACGCC GTCTAATGACGAGGAATGCCCCGGTGAATCCATGGATCACACTTCGTTTATCTCAGACTGGTCTGATTACATTATATAG
AA sequence Show only first row Show all	>Lus10008567 pacid=23161002 polypeptide=Lus10008567 locus=Lus10008567.g ID=Lus10008567.BGIv1.0 annot-version=v1.0 MPTGELLPPSQQPPMHPTAAEDESWLWAQIKAEARRDAEAEPALASYLYSTILSHSSLERSLAFHLGNKLSSPTLLSTLLYDLFLNTFSSDASLCAAAVA DLRAARIRDPSCVSFSHCLLNYKGFLACQAHRVAHKLWMQSRRPLALALQSRVSDVFAVDIHPAAKIGKGVLFDHATGVVVGETAVIGNNVSILHHVTLG GTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLINVPARSTAVGNPARLVGRKETPSNDEECPGESMDHTSFISDWSDYII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	0	1
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	1.0	0.9044
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	6.3	0.8357
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	6.8	0.8903
AT4G03600			unknown protein		Lus10018599 [exp]	8.0	0.8457
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	11.0	0.8575
AT2G46620			P-loop containing nucleoside t...		Lus10006295 [exp]	14.3	0.7904
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	14.8	0.7785
AT4G03600			unknown protein		Lus10039834 [exp]	15.0	0.8420
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	15.7	0.8501
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	19.6	0.8545

Compare expression of checked genes

Lus10008567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.