Plant FIBer expression Database

Lus10008568 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41200 138 / 3e-42 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032687
[exp]
230 / 1e-78 AT2G41200 110 / 1e-31 unknown protein
Lus10013613
[exp]
42 / 5e-05 AT1G64850 244 / 3e-84 Calcium-binding EF hand family protein (.1)
Lus10010653
[exp]
42 / 5e-05 AT1G64850 245 / 3e-84 Calcium-binding EF hand family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G038600
[exp]
160 / 2e-50 AT2G41200 124 / 5e-36 unknown protein
Potri.013G072600
[exp]
39 / 0.0006 AT1G64850 250 / 3e-86 Calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence
>Lus10008568 pacid=23161008 polypeptide=Lus10008568 locus=Lus10008568.g ID=Lus10008568.BGIv1.0 annot-version=v1.0
ATGGGTCAATCTTTGATGAAACTTGCTCCTGGGAGCGAGCATAACAAGGACAAAGACATTGGTGTTGTCATCGAAGATTGCTACGACAAGTATTTTGCTC
ACGAGCTAAGCTCAGCTGACTTCTACGCCGCAGTCTGCTTTACAGTCGAAGAAATCAACAAAAAGCTCAACAGCACACAGTTCCGCATCCCCGACACCGA
GAAGCTGAAGAAAGTCTACAGATCTCACTACAATGATGATGACAGTGAATATGAAAGGAAGAAGAAAACATTGTCCAAAGAAGAGTTCCAAAAGGTGCTT
GAAGAAATCATAATCGGAGCAGGATTCACAGGGTTTGGATCCAAGAACATCTTCCTCTACATTTTTGGTGTCCCTGCTGCTGCTATGTTCATCAAACAAA
GGATAGCTCCAACCGTGATCCCCAACGATGTATTCATCCCTGCCATCACCTCCGCCACCGTCCTCATCCTCGCCAAACTCAACAAAATATGA
AA sequence
>Lus10008568 pacid=23161008 polypeptide=Lus10008568 locus=Lus10008568.g ID=Lus10008568.BGIv1.0 annot-version=v1.0
MGQSLMKLAPGSEHNKDKDIGVVIEDCYDKYFAHELSSADFYAAVCFTVEEINKKLNSTQFRIPDTEKLKKVYRSHYNDDDSEYERKKKTLSKEEFQKVL
EEIIIGAGFTGFGSKNIFLYIFGVPAAAMFIKQRIAPTVIPNDVFIPAITSATVLILAKLNKI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41200 unknown protein Lus10008568
[exp]
0 1
AT2G41200 unknown protein Lus10032687
[exp]
1.0 0.9492
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Lus10010960
[exp]
1.7 0.9146
AT1G29380 Carbohydrate-binding X8 domain... Lus10015259
[exp]
3.2 0.9252
AT3G17950 unknown protein Lus10006150
[exp]
3.2 0.8693
AT1G70250 receptor serine/threonine kina... Lus10008361
[exp]
3.7 0.8677
AT5G65550 UDP-Glycosyltransferase superf... Lus10008956
[exp]
3.9 0.8974
AT2G28500 AS2 LBD11 LOB domain-containing protein ... Lus10036130
[exp]
4.5 0.9135
AT2G28350 ARF ARF10 auxin response factor 10 (.1) Lus10016090
[exp]
6.2 0.8354
AT1G31170 ATSRX sulfiredoxin (.1.2.3.4) Lus10036218
[exp]
8.0 0.8796
AT5G64810 WRKY ATWRKY51, WRKY5... ARABIDOPSIS THALIANA WRKY DNA-... Lus10035841
[exp]
9.2 0.8903

Lus10008568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.