Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48120 40 / 0.0008 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003038 [exp] 213 / 2e-68 ND 61 / 7e-10 Lus10003770 [exp] 185 / 6e-60 ND / Lus10004097 [exp] 184 / 2e-57 AT1G48120 61 / 4e-10 hydrolases;protein serine/threonine phosphatases (.1) Lus10024253 [exp] 171 / 9e-54 AT1G48120 40 / 4e-04 hydrolases;protein serine/threonine phosphatases (.1) Lus10017783 [exp] 171 / 2e-53 ND / Lus10009239 [exp] 145 / 1e-43 ND 44 / 3e-05 Lus10012774 [exp] 144 / 1e-43 ND 36 / 0.007 Lus10027017 [exp] 135 / 1e-40 ND / Lus10034854 [exp] 134 / 6e-40 AT1G48120 69 / 3e-14 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10008569 pacid=23160995 polypeptide=Lus10008569 locus=Lus10008569.g ID=Lus10008569.BGIv1.0 annot-version=v1.0 ATGGTCGTTGCCCCACTGATTCCGCCCCACAATATCTCTTGGCACATGCCATACCATGTCCTTAGAAAGTTTGGGATGTCCCAGCCAATTCCCACTGTGG ACATGTTAGAAGGCGAGGTCATATTCTTGCTCGGACTAATGCAGAGGAACGACCACGTGTGGGGGACGATGGTGGATCAGTACCTTGTCCAGTGGGGGAC CAGATTGGACCACGTGGCGGTGAGTGCTTTTCTCAACGATCTAGAGAGGTGGCACTTTCACGACGAGTACATGATGTGGTACCGTCAGTACACTCGTCGA CGGACTTCGCGACGTGGGACAGTGCAGCAATCCATCATTGATGGGTTGGAGAACCTATCTGTTCGGCTAGGTTCACAAGAGCAGCTTAGCCGAGAGGACT CCGAGGCGGTTCGGCAGTGTCTGTGTTTCATGATGTACACGAGTGGGGTCATGGAGCGTAGGCTTGATGACTCGGGGCGTCACCCACAGATGGCCCCCAC TGGCCAGATCTACACGGTTTACGACCCGTACGCCATTGATCCACAGAGCCGGGCGCTTGTCCCCCGACCAGATGAGCACGACGCCGCAGGACCCACGAGG CTGAGTTCGTACCGCGACCATACATACCAGATCTGTCTGCCTTTTGCGCCCCGCAGTACCAGCCGGCGATAG
AA sequence Show only first row Show all	>Lus10008569 pacid=23160995 polypeptide=Lus10008569 locus=Lus10008569.g ID=Lus10008569.BGIv1.0 annot-version=v1.0 MVVAPLIPPHNISWHMPYHVLRKFGMSQPIPTVDMLEGEVIFLLGLMQRNDHVWGTMVDQYLVQWGTRLDHVAVSAFLNDLERWHFHDEYMMWYRQYTRR RTSRRGTVQQSIIDGLENLSVRLGSQEQLSREDSEAVRQCLCFMMYTSGVMERRLDDSGRHPQMAPTGQIYTVYDPYAIDPQSRALVPRPDEHDAAGPTR LSSYRDHTYQICLPFAPRSTSRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	0	1
					Lus10000550 [exp]	1.0	1.0000
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10003645 [exp]	2.0	1.0000
					Lus10005465 [exp]	2.6	1.0000
					Lus10025894 [exp]	4.6	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	4.7	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	4.9	1.0000
					Lus10014487 [exp]	5.1	1.0000
					Lus10010778 [exp]	5.2	1.0000
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10035297 [exp]	6.1	1.0000
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	6.2	1.0000

Compare expression of checked genes

Lus10008569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.