Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15690 376 / 5e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32450 256 / 2e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G25580 253 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 241 / 4e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 243 / 6e-72 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 233 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 229 / 1e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G21065 223 / 1e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G56690 227 / 7e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 226 / 9e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032688 [exp] 881 / 0 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014049 [exp] 390 / 1e-130 AT2G15690 478 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019864 [exp] 383 / 9e-128 AT2G15690 477 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028413 [exp] 297 / 2e-93 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 295 / 1e-92 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 243 / 1e-72 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 239 / 7e-72 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 236 / 6e-69 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 224 / 1e-68 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058300 [exp] 422 / 8e-142 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G116600 [exp] 325 / 3e-104 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 250 / 3e-78 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086900 [exp] 240 / 1e-71 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 234 / 4e-70 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 234 / 6e-70 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.007G085500 [exp] 237 / 8e-70 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G005400 [exp] 232 / 2e-68 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 229 / 5e-68 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 228 / 7e-68 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008570 pacid=23160990 polypeptide=Lus10008570 locus=Lus10008570.g ID=Lus10008570.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTTTCGCCTCATCTCCAGCATCCAGGGAACACGATAACATTCTACCCTCTTCCTCCTTTCTATACAGTCGTCAAAACCATACTTCCTT CTCCGAAACCTAACAACAAGCACAAATGGCTCTGCTCCTACACCACCCCTAAGCCTCGCAACTCCCCTCCTTCTTCCAAGGTTTATCGCCGCCAAAAGCC CAGAAACCCATCTTCAGACGATCGCAAATCCCGCACCACCACCACTCCCGTAAACACCGACCAACTAATCCCAAAGGCGCCTGAAGAAGATACCGTCGAT CTGGTCAGCCTTTGCAACGATGGTAAAATTGAAGAAGCAGTAGCTTATATGACTCAAGCCGGCGTTCCCGCCGGTCATGATGTGTTCGTCGCTTTATTCG ACGGCTGTAGAAGCTCCAAGTCGTCGCTCGAGATTTGTAAGAAGGTACACGGTTTGCTGAGGCGGTCGCCGTTCGCTGGTGACATCGGGCTGGGAAATAA ACTAATCCAATTGTACGGAGAATACGGGAGTGTTAAGGATGCACGCATGGTGTTCGATAGAATGCGCGAGAGAAAAAACATGGATTCTTGGCATTTGCTG ATGAACGCTTATGCAGCGAATGGGCAGGGCCGTGATGGGCTTTTGTTAGTTGAGGAAATAAAGTCGTCTGGGTTGAAACTCAACGAGGATAGCTTTAGTG CTGTATTTGGATTGTGTGCGAGTGCCATGGATGTTGAACAAGGTTTGTTACAGCTTGAATCCATGAGTAAAGAGTACGACATTGTTCCAGGAATAAGGCA GTATGTTGAAGTTATTGGCATATTTGGCAGTGCCGGTTACTTGAATGAGGCTGTGGAGTTTGTAGAGAGAAGAATGCCAATTGAACCCACTGTGGAGATT TGGGAGGCGGTTAAGAATTTTGCTAGGATTCATGGAGATTTAGAGCTGGAAAACCACATCGAGGAGTTGTTGCAAATAGAAATCGAGAACAAAGTTGCAG CATTGCCGCCTAGGAAGAAGTATTCTGGGACTAACATGGTAGAGGATAAGAACAGGTTGGCCGAGTATCGTTCTGCAGATCGTTACAAGGAGGATGGAAC TGGGAAACTGAAAGGAGGGCTGAATGGCCAGATGAGGGAAGCTGGATATGTTCCGGATACGAGATATGTGCTTCACGACATTGATGAGGAGGCGAAGGTG AAGGCGTTGATGTATCATAGTGAGAGATTGGCGATTGCGTATGGGTTGATAAGCACCCCGGCAAGGCAGACGCTTAGGATCATGAAGAATCTTAGGATCT GCGGGGACTGTCACAATGCTATAAAGATAATGTCGAGGATAGTTGGGAGGGAGCTCATTGTTAGAGATAACAAGCGGTTTCATCACTTCAGAGATGGAAG ATGTTCTTGTGGGGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10008570 pacid=23160990 polypeptide=Lus10008570 locus=Lus10008570.g ID=Lus10008570.BGIv1.0 annot-version=v1.0 MAASLSPHLQHPGNTITFYPLPPFYTVVKTILPSPKPNNKHKWLCSYTTPKPRNSPPSSKVYRRQKPRNPSSDDRKSRTTTTPVNTDQLIPKAPEEDTVD LVSLCNDGKIEEAVAYMTQAGVPAGHDVFVALFDGCRSSKSSLEICKKVHGLLRRSPFAGDIGLGNKLIQLYGEYGSVKDARMVFDRMRERKNMDSWHLL MNAYAANGQGRDGLLLVEEIKSSGLKLNEDSFSAVFGLCASAMDVEQGLLQLESMSKEYDIVPGIRQYVEVIGIFGSAGYLNEAVEFVERRMPIEPTVEI WEAVKNFARIHGDLELENHIEELLQIEIENKVAALPPRKKYSGTNMVEDKNRLAEYRSADRYKEDGTGKLKGGLNGQMREAGYVPDTRYVLHDIDEEAKV KALMYHSERLAIAYGLISTPARQTLRIMKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFRDGRCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	0	1
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	1.4	0.9080
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	3.0	0.8734
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	3.5	0.8997
AT1G02700			unknown protein		Lus10036329 [exp]	4.7	0.8469
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	4.9	0.9056
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	6.0	0.8882
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	6.0	0.8984
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	6.3	0.8943
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	8.4	0.8716
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	8.7	0.8549

Compare expression of checked genes

Lus10008570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.