Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29890 528 / 0 choline monooxygenase, putative (CMO-like) (.1) AT1G44446 48 / 7e-06 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032689 [exp] 842 / 0 AT4G29890 529 / 0.0 choline monooxygenase, putative (CMO-like) (.1) Lus10000218 [exp] 47 / 2e-05 AT1G44446 858 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042718 [exp] 44 / 0.0003 AT1G44446 844 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000214 [exp] 44 / 0.0003 AT1G44446 856 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10029678 [exp] 44 / 0.0003 AT1G44446 859 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072800 [exp] 618 / 0 AT4G29890 557 / 0.0 choline monooxygenase, putative (CMO-like) (.1) Potri.002G083200 [exp] 47 / 2e-05 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.005G178300 [exp] 46 / 4e-05 AT1G44446 843 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10008571 pacid=23160984 polypeptide=Lus10008571 locus=Lus10008571.g ID=Lus10008571.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTGATGGGCTCGCCGGAGACTATCAAAATTACTGTCCAGCCAACTCTCAACCGCAAAACTGGCAACGCTGTCTTTCACTGGAATCCGATCA TTAGAAATACAAGTCAACAGCTGCGTCGTCGGCGGCGGCCGATCATTGTTAGCAGTAGCAGCGCTGGTCAGAGTTGGAAACGATCTCACTGTGAAAACCT TGTTCATGAGTTCGACCCAACTATTCCGATCGAGAAAGCCCTGACTGCACCCAGCTCCTGGTACACTGATTCTTCCTTGTACGATTTTGAGCTCAGTCGC GTCTTCTACAGAGGGTGGCAAGCCGTCGAATTCGCCGCCAAGACAGGCTATACTGAGCAGATAAAGGAGCCTCGTGACTATTTTACTGGAAGATTAGGGA ACATAGAATTCGTGGTGTGTAGAGATGATGACGGGAAAGTTGAAGCTTTTCACAATGTCTGCCGTCATCATGCTTCTCTTCTTGCATCTGGAAGTGGGCA GAAATCTTGCTTTGTATGCCCTTATCATGGATGGACGTATGGGTTAGACGGATCTCTCCGTAAAGCAACAAGGATTACTGGGATCCACAACTTCGATGTA AATGACTTTGGGCTTATTCCAATAGATGTGGCGGTTTGGGGACCTTTTGTTCTTCTCAATCTAGAGAGGAACTGTAGTCGACCTAAGTATGATGTTGACG ACGATAATCTGGTAGCGAATGAATGGCTTGGCAGCACCTCCGAAATACTCAAGTCCGGTGGGGTTGATGCTTCTCTAAGCTATCTTTTTAGGCGCGAGTA CACTATTGAATGCAACTGGAAGGTGTTTTGTGATAACTATTTGGATGGGGGTTACCATGTCCCATATGCACACAAAGGCCTTGCTTCTGGTCTGGAGCTT GATTCATACTCCACCACGACCTACGGAAAGGTTAGCATCCAAAGTTGCAAAGGTGGCTCAACTGAGAGGCTGGGATCCAAGGCATTATATGCTTTCATAT ACCCAAATTTCATGATTAATCGGTACGGACCTTGGATGGACACTAATCTGGTAGTCCCGTTAGGACCGAGAAAATGCCAAGTTATATTCGACTACTTCAT TGAACCTCATCTCAAGGATGACAAGTCTTACATTGAGCAAAGCGTCATCAATAGCGAAAAAGTGCAGATGGAAGACATTATCCTGTGTGAAGGTGTACAA AGAGGCCTGGAATCACCGGCTTATTGCACTGGCAGATATGCACCAACCGTGGAGAACGCTATGTACCATTTCCACCAACTGCTTCATAGTGATCTTTCTT AA
AA sequence Show only first row Show all	>Lus10008571 pacid=23160984 polypeptide=Lus10008571 locus=Lus10008571.g ID=Lus10008571.BGIv1.0 annot-version=v1.0 MAAVMGSPETIKITVQPTLNRKTGNAVFHWNPIIRNTSQQLRRRRRPIIVSSSSAGQSWKRSHCENLVHEFDPTIPIEKALTAPSSWYTDSSLYDFELSR VFYRGWQAVEFAAKTGYTEQIKEPRDYFTGRLGNIEFVVCRDDDGKVEAFHNVCRHHASLLASGSGQKSCFVCPYHGWTYGLDGSLRKATRITGIHNFDV NDFGLIPIDVAVWGPFVLLNLERNCSRPKYDVDDDNLVANEWLGSTSEILKSGGVDASLSYLFRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLEL DSYSTTTYGKVSIQSCKGGSTERLGSKALYAFIYPNFMINRYGPWMDTNLVVPLGPRKCQVIFDYFIEPHLKDDKSYIEQSVINSEKVQMEDIILCEGVQ RGLESPAYCTGRYAPTVENAMYHFHQLLHSDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	0	1
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	2.2	0.9463
AT4G28290			unknown protein		Lus10039825 [exp]	2.8	0.9440
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	3.7	0.9374
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	5.5	0.9423
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	7.3	0.9438
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10016787 [exp]	7.4	0.9229
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	8.8	0.9414
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	8.8	0.9374
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	9.7	0.9242
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	10.2	0.9129

Compare expression of checked genes

Lus10008571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.