Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26180 494 / 3e-177 Mitochondrial substrate carrier family protein (.1) AT1G14560 359 / 6e-124 Mitochondrial substrate carrier family protein (.1) AT4G01100 208 / 1e-64 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 175 / 4e-52 Mitochondrial substrate carrier family protein (.1) AT3G53940 171 / 3e-50 Mitochondrial substrate carrier family protein (.1) AT3G55640 170 / 4e-50 Mitochondrial substrate carrier family protein (.1) AT3G51870 166 / 6e-48 Mitochondrial substrate carrier family protein (.1) AT5G61810 163 / 2e-47 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G01500 159 / 4e-45 TAAC thylakoid ATP/ADP carrier (.1) AT5G51050 159 / 2e-44 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032690 [exp] 687 / 0 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 372 / 6e-129 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 204 / 8e-63 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 203 / 2e-62 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 201 / 1e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 196 / 9e-60 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 175 / 7e-52 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 165 / 8e-48 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 160 / 6e-46 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153600 [exp] 572 / 0 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 389 / 1e-135 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 208 / 2e-64 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 205 / 3e-63 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 203 / 1e-62 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 202 / 3e-62 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 174 / 1e-51 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 172 / 6e-51 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 171 / 2e-50 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 164 / 2e-47 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10008572 pacid=23161004 polypeptide=Lus10008572 locus=Lus10008572.g ID=Lus10008572.BGIv1.0 annot-version=v1.0 ATGGCTAAGAGTAAGAGAGAGGAAAGAGATGTCGGCTCTTTGTTCTTGGACGGAATGATAGATAACATGCCCGTTTTTGCCAAGGAGCTCGTCGCCGGTG GGGTTGCCGGTGGCTTTGCCAAGACTGTTGTAGCTCCCCTCGAACGTGTCAAGATTCTTTTCCAGACTAGAAGAGATGAATTCAAGGCTATTGGGCTGCT TGGTTCAATAAACAAGATTGGAAGAACTGAAGGGATTAAAGGATTCTATAGAGGAAATGGAGCTAGTGTTGCTCGAATAGTCCCTTATGCTGCCCTGCAT TATATGACATATGAGCAATATCGTAGATGGATCATACACAGTTTTCCAGATGTAGGGAGGGGTCCTGTCCTCGATCTTGTGGCAGGTTCCTTTGCTGGAG GAACTGCTGTTCTTTTCACCTATCCTCTTGACTTAGTTCGAACCAAACTTGCTTACCAGGTTGTTGGTGTGCCGAAATTAAACATGCGTGGGGCTGTCGG TTCTGAGCAAATGTATAGAGGCATAGCTGATTGTTTTTCCAAGACTTTCCGAGAGTCTGGCCTCCGAGGTCTCTATCGTGGTGTGGCCCCTTCTTTATAC GGAATCTTCCCTTATGCTGGTTTGAAGTTTTACTTCTACGAGGAGATGAAACGGCATGTCCCTGAGAAGCACAGGAAAGATATTGCAGTGAAGTTGGTTT GTGGATCAGTGGCTGGCTTATTAGGCCAGACATTCACATACCCTCTTGATGTTGTCAGGAGGCAAATGCAGGTGGAAAGGCTTTCCGCATCTAGTAGCGC AGAGCTGAAAGGAACAATGGAAACCCTTTTCATGATCGCAGAAAAGCAAGGGTGGAAGCAATTATTTTCAGGACTGAGTATAAACTACCTGAAGGTTGTT CCATCTGTGGCGATCGGTTTTACAGTGTATGATGTTGTGAAATCACGCCTGAGAGTACCGTCGCGGGAAGTTTTGGACGCTGTAACTGACAACAGGAATA ATCAACAAAACTTGCATTCATAA
AA sequence Show only first row Show all	>Lus10008572 pacid=23161004 polypeptide=Lus10008572 locus=Lus10008572.g ID=Lus10008572.BGIv1.0 annot-version=v1.0 MAKSKREERDVGSLFLDGMIDNMPVFAKELVAGGVAGGFAKTVVAPLERVKILFQTRRDEFKAIGLLGSINKIGRTEGIKGFYRGNGASVARIVPYAALH YMTYEQYRRWIIHSFPDVGRGPVLDLVAGSFAGGTAVLFTYPLDLVRTKLAYQVVGVPKLNMRGAVGSEQMYRGIADCFSKTFRESGLRGLYRGVAPSLY GIFPYAGLKFYFYEEMKRHVPEKHRKDIAVKLVCGSVAGLLGQTFTYPLDVVRRQMQVERLSASSSAELKGTMETLFMIAEKQGWKQLFSGLSINYLKVV PSVAIGFTVYDVVKSRLRVPSREVLDAVTDNRNNQQNLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	2.2	0.7587
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	9.2	0.8156
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10024847 [exp]	21.1	0.7815
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	25.9	0.7365
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	47.0	0.7100
AT1G27752			Ubiquitin system component Cue...		Lus10018693 [exp]	80.6	0.6744
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10032244 [exp]	81.5	0.6927
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	99.0	0.7080
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	158.9	0.6900
AT2G27285			Coiled-coil domain-containing ...		Lus10009414 [exp]	200.6	0.6708

Compare expression of checked genes

Lus10008572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.