Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29530 276 / 1e-94 Pyridoxal phosphate phosphatase-related protein (.1) AT1G17710 261 / 5e-88 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 255 / 1e-85 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008479 [exp] 286 / 1e-97 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10001479 [exp] 274 / 5e-93 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 258 / 7e-87 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 256 / 5e-86 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 219 / 8e-72 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037652 [exp] 177 / 9e-56 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10032691 [exp] 88 / 7e-20 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034600 [exp] 278 / 8e-95 AT1G17710 399 / 1e-141 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Potri.008G196800 [exp] 278 / 1e-94 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.018G054800 [exp] 243 / 6e-81 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06888 [flax] [poplar] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Lus10008573 pacid=23161001 polypeptide=Lus10008573 locus=Lus10008573.g ID=Lus10008573.BGIv1.0 annot-version=v1.0 ATGGGTCTCTCTTCTTTGTTCAACCAGCTCCGCTTATCGCTACCATGGAACTCGCTAATGGATAGGATGATGTCGGAGCTCCATTTGCAAGGGAAATCCT CGGAGGACATTGCTAATTGCTTGAGGGAGACTCCATTGCATCCCAACATAATCGGAGCTATCAAATCAGCTCATGCCCTTGGATGTGATTTGAGAGTCAT TAGTGATGCAAACCTCTTTTTCATTGAGAAAATCTTGGACCATCATGGATTGTTGGGATGCTTCTCGCATATAGACACGAATCCAGCTACCTTGGATGAG CATGGGAGGCTTAGGATCTCCCCTTATCATGATCTCGGCTTACCTCCTCATGGTTGCAGCCTGTGCCCTCTCAATATGTGCAAGGGTTTGATCATTGATA AACTCTGCAGTAGTTCTTCCATGTCTGAGAGCAAGAAAAAGCGGTTTATCTACCTTGGCGATGGGGGTGGCGATTACTGTCCGAGTCTGAAACTAGGAGA AGGGGATTATGTAATGCCGAGGAAGAACTATCCTCTATGGAAACGCATTCACAATGAGCCAATGCTCATCAAGGCACAAGTTCATGAATGGACCGATGGC GAGGAGCTTGCAAAAATCCTTCTCCAACTTATTGATGCTATCTATGCTGATATTAAGCCAACTGGGTAA
AA sequence Show only first row Show all	>Lus10008573 pacid=23161001 polypeptide=Lus10008573 locus=Lus10008573.g ID=Lus10008573.BGIv1.0 annot-version=v1.0 MGLSSLFNQLRLSLPWNSLMDRMMSELHLQGKSSEDIANCLRETPLHPNIIGAIKSAHALGCDLRVISDANLFFIEKILDHHGLLGCFSHIDTNPATLDE HGRLRISPYHDLGLPPHGCSLCPLNMCKGLIIDKLCSSSSMSESKKKRFIYLGDGGGDYCPSLKLGEGDYVMPRKNYPLWKRIHNEPMLIKAQVHEWTDG EELAKILLQLIDAIYADIKPTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29530			Pyridoxal phosphate phosphatas...		Lus10008573 [exp]	0	1
					Lus10016844 [exp]	4.2	0.8236
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	4.9	0.8648
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	6.6	0.6936
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10000847 [exp]	7.9	0.6636
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	8.2	0.8411
					Lus10026713 [exp]	10.4	0.8306
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	12.0	0.8287
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10029877 [exp]	12.3	0.6429
					Lus10021851 [exp]	13.4	0.8287
					Lus10008791 [exp]	14.7	0.8287

Compare expression of checked genes

Lus10008573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.