Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53770 547 / 0 Nucleotidyltransferase family protein (.1) AT4G00060 103 / 7e-23 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) AT2G45620 74 / 8e-14 Nucleotidyltransferase family protein (.1) AT2G39740 69 / 4e-12 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT3G45750 52 / 1e-06 Nucleotidyltransferase family protein (.1.2) AT3G45760 47 / 3e-05 Nucleotidyltransferase family protein (.1.2) AT2G40520 46 / 6e-05 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032691 [exp] 788 / 0 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1) Lus10015886 [exp] 89 / 3e-18 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10009279 [exp] 77 / 2e-14 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10015854 [exp] 65 / 1e-10 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 64 / 1e-10 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 64 / 1e-10 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 59 / 8e-09 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10034219 [exp] 59 / 9e-09 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10009310 [exp] 56 / 3e-08 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G400800 [exp] 605 / 0 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.014G066000 [exp] 84 / 1e-16 AT4G00060 1491 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Potri.002G151000 [exp] 77 / 2e-14 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.014G073300 [exp] 64 / 1e-10 AT2G45620 575 / 0.0 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 57 / 2e-08 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Potri.019G056800 [exp] 52 / 6e-07 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G020400 [exp] 45 / 0.0001 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.008G102500 [exp] 42 / 0.001 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03828 [flax] [poplar] PAP_assoc Cid1 family poly A polymerase CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10008574 pacid=23161018 polypeptide=Lus10008574 locus=Lus10008574.g ID=Lus10008574.BGIv1.0 annot-version=v1.0 ATGGAGCCACCGGCCGATTTGCCGGTCCCTCTCTACGAAACCCTAGTCGTTCTTCCACTTACCTCCTCCGCCCCCACATCGCCATCCGCTGCTAACCAAT CCCCTCACCCGCCTCAATCTCCAGAGCCCTACACAGTTCTCCGCAATGAGATATCTCTCTCCACCGTTCCTTCCGCCGCCCTCCAGGAGTCCGCCGCAGC CGATTTCTTCTCTCTTGATGTTGGGGATGATGAAGCTGAGGAAGATTTTAGGACTCCTAATGGTCAATCAGAGCTGAACCGTCCAGTTATTACTAGGACG GCTGAGTCTGCGTTTGATGTCGATCCCATGCTGGAGAGTGGATGGTTTCGAGGAAACAGTAAGTTCAAGAGTCCCATGCTGCAGCTGCATAAAGAGATAG TCGATTTCTCTGATTTCCTGTCCCCTACCCTTGAAGAGCAAGCTACACGCAGTACAGCAGTGCAATCTGTTCGTGATGTTATCAAATACATATGGCCTAG TTGCCAGGTGGAAGTTTTTGGGTCATTTAGGACCGGTCTTTATCTTCCAACAAGTGATATTGATGTTGTAATTTTGAGTTCGCATGTCATCACTCCCCAA ACTGGTTTGCGGGCTATTTCAAGGGCTTTGTCTCAAAGAGGAATTGCAAAGAAGATACAGGTCATTGCCAAGGCTCGTGTGCCAATCATAAAGTTTGTAG AAATGAGAAGTGGCCTTTCTTTTGATATAAGTTTTGATGTGGACAATGGTCCAAAAGCTGCTGATTTTATAAAGGATGCAGTAGTCCAATGGCCTTCTCT ACGACCGTTGTGCCTAATCTTGAAAGTATTTTTGCAACAGAGAGAACTCAATGAGGTATATACTGGTGGGATAGGTTCTTATGCTCTGCTTACCATGCTG ATGGCCGCGTTAAAGAATCAGAGTTCGGAACGTTCTTCTCCAGAGCATAATTTGGGAATTCTTTTGATAAACTTTTTTGATCTGTATGGGCGCAAATTGA ACGTCAATGACGTAGGTGTCTCTTGCGGAGGATTCTTTTCAAAGCATAGAAAGGGGTTTATGAATAACGGGAGGCCATTTCTCATTTCCATCGAGGACCC ACAGACACCTCAGAATGACATTGGCAAGAGCTCCTTTAATTATTTCCAGGTGAGATCAGCATTTGCCATGGCCTATTCAACCTTGACTAATCCGAAGACA ATCTTCGCCTTGGGGCCAAACAGGAGTATACTGGGCACCATCATTAGGCCGGATAAGGTTCTGCTTCAGCGTAAAGGAGGAAAGAATGGTGACGTGACTT TCAACAGCTTGTTACCTGGAGCTGGAGAGCCGTTGATGTCAAAATATGATCACCAGGATGTACTGTACAATTGGCAGTTGGAGGATGACGAGGAAGCATT ACCTCGGGGAAATGGGTTTGCTGTCGACGAGAACCATTCCTCTGGGAAGAAGAGGAAATCATCGTCTTCAGCAGCAAAAAAATCGAAAAAGAAGAGGTTA AAAGAAGAGAGAGGGGAGTCGTTTGATGAGGGTTCCCCGAGCCAGGAGAAGGGATCAAGAAAGAAGAAATCACGGTGGAGACATCATCGTAAGGTTACTT TTTGA
AA sequence Show only first row Show all	>Lus10008574 pacid=23161018 polypeptide=Lus10008574 locus=Lus10008574.g ID=Lus10008574.BGIv1.0 annot-version=v1.0 MEPPADLPVPLYETLVVLPLTSSAPTSPSAANQSPHPPQSPEPYTVLRNEISLSTVPSAALQESAAADFFSLDVGDDEAEEDFRTPNGQSELNRPVITRT AESAFDVDPMLESGWFRGNSKFKSPMLQLHKEIVDFSDFLSPTLEEQATRSTAVQSVRDVIKYIWPSCQVEVFGSFRTGLYLPTSDIDVVILSSHVITPQ TGLRAISRALSQRGIAKKIQVIAKARVPIIKFVEMRSGLSFDISFDVDNGPKAADFIKDAVVQWPSLRPLCLILKVFLQQRELNEVYTGGIGSYALLTML MAALKNQSSERSSPEHNLGILLINFFDLYGRKLNVNDVGVSCGGFFSKHRKGFMNNGRPFLISIEDPQTPQNDIGKSSFNYFQVRSAFAMAYSTLTNPKT IFALGPNRSILGTIIRPDKVLLQRKGGKNGDVTFNSLLPGAGEPLMSKYDHQDVLYNWQLEDDEEALPRGNGFAVDENHSSGKKRKSSSSAAKKSKKKRL KEERGESFDEGSPSQEKGSRKKKSRWRHHRKVTF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53770			Nucleotidyltransferase family ...		Lus10008574 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	16.2	0.6864
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	22.8	0.6764
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	27.7	0.6514
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	60.3	0.6469
					Lus10026868 [exp]	148.9	0.5607
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	156.1	0.5947
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	168.2	0.5898
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	184.5	0.5887
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	211.0	0.5785
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10041428 [exp]	215.4	0.5714

Compare expression of checked genes

Lus10008574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.