Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29520 320 / 1e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032692 [exp] 460 / 2e-164 AT4G29520 335 / 4e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067300 [exp] 317 / 2e-108 AT4G29520 337 / 3e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008575 pacid=23160992 polypeptide=Lus10008575 locus=Lus10008575.g ID=Lus10008575.BGIv1.0 annot-version=v1.0 ATGGCTGTTCTGGCGGTGCTGGTTTTCTCGGCGGTATGGGTTCCGGCTTCAGTCTGCTCTAAGAAAGTCGAAACAGCTGCGAGGAGAGAGGATGTGCCGT TTATCAGGTGCCAAGTATGTCAGATGATCGCTGCACAACTGCAGCAGCAAGTTCAAAATAAGCAAGCCCAGATCTCTCCCAAGAAGATCTCTGAGTACCA AATCATTGAGATTGCGGAGAATGTGTGCAATTTGAAGAAGGAAGAGGCTGATTGGATTACAAGGATTGATATAGTGGAACACGGAGACAAGTTGGAGTTG GTAGAACAAGAAGAGGAAGGGATGTGCAATGCTGAATGTAAGACGATTGAGAAAGCCTGCCAAGAGGTTATGGGATATTCTGATACTGATGTCGCCGAGT ACATGTATAGTTCTAAGCCTCAGCTTGATAAGTTGACCAACTATCTCTGCAAGGACCTTTCCGGAGCTTGCACTAAGAAGACACCTCCAGTCCCCAAGGA TAGGATTCATGGGGAGGCATTTACTCCAAAACCGTCTAAGCAGGCCGAAATGGACAAGATCATGAGATCCATGGAGGGCATGCCTGGAGCACCAGGAATG AAAATGTATTCGAGAGAGGAACTGATGAACAATATGAATATCGGTAATGAAGATGCCGATGATGAGGGCGATGAAGATGCAGCGGAACAACCAAATTTCC CCAAGAATCTGGGAAAAATTCTAAGAGAAAAAGATAAGAAGGGGGGAAAGGAGGACTGGAAGAAGAAGATTACGAAACAAGTGGTGAGCACAGGTGAGAC GTTAAAGAAGCATGCACAAAGGGTCTCCAACCGAGTCAGGCAATGGTGGAAAGGAATGAAGAAGCAGAAGAAGAATTCCAGGACTGGCAAATCAGAGCTA TAG
AA sequence Show only first row Show all	>Lus10008575 pacid=23160992 polypeptide=Lus10008575 locus=Lus10008575.g ID=Lus10008575.BGIv1.0 annot-version=v1.0 MAVLAVLVFSAVWVPASVCSKKVETAARREDVPFIRCQVCQMIAAQLQQQVQNKQAQISPKKISEYQIIEIAENVCNLKKEEADWITRIDIVEHGDKLEL VEQEEEGMCNAECKTIEKACQEVMGYSDTDVAEYMYSSKPQLDKLTNYLCKDLSGACTKKTPPVPKDRIHGEAFTPKPSKQAEMDKIMRSMEGMPGAPGM KMYSREELMNNMNIGNEDADDEGDEDAAEQPNFPKNLGKILREKDKKGGKEDWKKKITKQVVSTGETLKKHAQRVSNRVRQWWKGMKKQKKNSRTGKSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29520			unknown protein		Lus10008575 [exp]	0	1
AT4G29520			unknown protein		Lus10032692 [exp]	2.4	0.8688
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015160 [exp]	3.0	0.8821
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Lus10020966 [exp]	15.3	0.8795
AT5G50460			secE/sec61-gamma protein trans...		Lus10041552 [exp]	15.7	0.8198
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	20.6	0.8801
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10005047 [exp]	28.2	0.8717
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037963 [exp]	33.7	0.8285
AT5G14030			translocon-associated protein ...		Lus10012565 [exp]	49.1	0.8583
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	50.8	0.8525
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	54.1	0.7833

Compare expression of checked genes

Lus10008575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.